Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0362
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    33   0.052
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   3.4  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    27   3.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.0  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    26   6.0  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.9  
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    25   7.9  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.9  

>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -2

Query: 687 DVEFLELRSNSSHDSHRINHVRRIRDFYADLRERDPTGPIENGITYIV 544
           D+E  +LR      ++  N VRR+R F A+++  D  GPI +G T ++
Sbjct: 473 DIEVNQLRPGDILSNYE-NPVRRVRSFVAEIQTFDIHGPILSGSTLVL 519


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 481 TSPPRITRRRVRQIPWLYERTHNVRDTILDGSCGISLSKI 600
           T  P+ T++ V+ +  L ER   V D+I+D   GIS S +
Sbjct: 234 TKQPKSTKKLVQGVFELKERLPTVIDSIIDAIDGISKSAV 273


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 373 TRQTLPGLNPARSYAPIGRATWSP 444
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 154 LVGSAAASNRHLSTLCRLPHVVFGG 80
           +VG + AS    STLC+L H +F G
Sbjct: 7   IVGVSGASCSGKSTLCQLLHAIFEG 31


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 397 NPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRRVRQIPWL 531
           NP  +  P+     +P   P   PP  TTSP  I    +R + W+
Sbjct: 228 NPVTT-PPVNNTLLTPPAPPVELPPVTTTSPNAI----IRSVQWI 267


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 469 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 338
           A F P  A+    L + E  NV  S   T  G     +QLSYWG
Sbjct: 48  ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 WLARTDPADVARVESRT 407
           WL  TDP+ V+RVE  T
Sbjct: 419 WLQNTDPSTVSRVEVST 435


>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -2

Query: 690 LDVEFLELRSNSSHDSHRINHVRRIRDFYADLRE 589
           LDV  ++++  ++H S + +HVR I+ +  ++ +
Sbjct: 134 LDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQ 167


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 337 CPNTITVGWPGQTRQTLPGLNP 402
           C ++  + WPG +RQ L  L+P
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,089
Number of Sequences: 5004
Number of extensions: 52229
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)