Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0362
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 32 0.50
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 32 0.50
01_06_0640 + 30779457-30779623,30779707-30779828,30779959-307800... 31 0.88
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 30 1.5
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 30 1.5
01_05_0572 + 23356737-23357705,23357811-23357957,23358048-23358443 30 1.5
09_01_0013 - 355103-355435 29 2.7
01_05_0164 + 18827390-18827710 29 2.7
11_03_0010 - 8922361-8922375,8923888-8924610 29 4.7
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 29 4.7
04_04_0462 + 25393733-25394347 29 4.7
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 28 6.2
02_05_0977 - 33239887-33240566,33241010-33241985 28 6.2
02_05_0683 + 30877731-30878243 28 6.2
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 8.2
02_01_0501 + 3655345-3655722 28 8.2
01_01_0070 - 542603-542686,542803-543441 28 8.2
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +1
Query: 388 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI 498
P PA S A + AT SPR A +PPW T PP I
Sbjct: 91 PMPTPAASSA-LAPATSSPRPASPPTPPWTTAPPPGI 126
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 198 VASCGEGFVDPRRAVWWAARLHPI 127
V GEG +PRRA WW A H +
Sbjct: 51 VDDAGEGEANPRRAKWWYATFHSV 74
>01_06_0640 +
30779457-30779623,30779707-30779828,30779959-30780014,
30780147-30780254
Length = 150
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 367 GQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRR 510
G R+ L GL A S + +P A ARSP S PR TRRR
Sbjct: 6 GGARRALAGLRSASSSRAFSQP--APAAAAARSPELAAFSLPRSTRRR 51
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 199 SGQLWGRLRRPSQSSLVGSAAASNRHLSTLCR 104
SG WGR +Q+ LVGS++A S CR
Sbjct: 126 SGSGWGRFIGCTQTRLVGSSSAGKTRTSVCCR 157
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 177 SLPHSWPLLLQRSARSWSAGCSVPAG 254
SLPH +PLLL R W + CS+ G
Sbjct: 78 SLPH-FPLLLHAQRRKWRSRCSIKCG 102
>01_05_0572 + 23356737-23357705,23357811-23357957,23358048-23358443
Length = 503
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -3
Query: 617 SVISTPIFEREIPQDPSRMVSRTLCVLSYNQGICRTRLLVIRGGDVVPQGGLLAGAS 447
S + + + + P++ +RT + S +GI R+ LV+ GD+ PQG ++ A+
Sbjct: 44 SALPDDLLRHIVSRLPTKDAARTTALSSRWRGIWRSTPLVLIDGDLFPQGPHISAAA 100
>09_01_0013 - 355103-355435
Length = 110
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 403 ARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRRVRQIPW 528
AR A GR W PR P R P W P R ++ R+ W
Sbjct: 28 ARGGAAGGRRAWRPRWRPQRRPRW---RPQRRLGQQRRRATW 66
>01_05_0164 + 18827390-18827710
Length = 106
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 427 RATWSPRLAP--ARSPPWGTTSPPRITRRRVRQIP 525
R TW P LAP +R PP TT+ P RR +P
Sbjct: 46 RTTWRPDLAPTTSRRPP-ATTTDPHGRRRSAGDLP 79
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 467 GLLAG--ASRGDHVALPIGAY-ERAGFNPGNVC 378
G AG A D A IGAY AG+NPG +C
Sbjct: 61 GAAAGMAADAADSAAANIGAYIPEAGYNPGKLC 93
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 391 GLNPARSYAPIGRATWSPRLAPARSPPWG 477
G++P+R A +P LAPA +P WG
Sbjct: 163 GVSPSRVAVTAAAAEPTPALAPAPAPEWG 191
>04_04_0462 + 25393733-25394347
Length = 204
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 479 VPQGGLLAGASRGDHVALPIGAYERAGFNPGNVCRVC 369
VP GG G G H + +Y A G+V RVC
Sbjct: 96 VPPGGKAGGVCLGGHSVAAVVSYGGAFLGEGSVGRVC 132
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 398 IPHVHMLRSGERRGPLGSRRPEVRPGELH 484
IPH L + + P+ S++P+VR E+H
Sbjct: 158 IPHSEHLNNDLTQDPVASKKPKVRKKEIH 186
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 361 WPGQTRQTLPGLNPARSYAPIGRATWSPR--LAPARSPPWGTTSPPRITRRRV 513
W +R + G RS AP G WS + L+ +G T P TRRRV
Sbjct: 459 WRRYSRTVVMGTFLDRSIAPAGWLEWSGQFGLSTLYYGEYGNTGPGAGTRRRV 511
>02_05_0683 + 30877731-30878243
Length = 170
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 491 GGDVVPQGGLLAG-ASRGDHVALPIGAYERAGFNPGNVC 378
GG GG A A+RG VA+P+ A A + GN C
Sbjct: 126 GGSGASDGGSTAAMAARGSTVAVPVAAAAVARGSRGNTC 164
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 174 VDPRRAVWWAARLHPIAT*AHCAVFLT*SSGVVLKCS 64
+ R VW A R +PI T + + +T SSG+VL S
Sbjct: 64 IPQRTVVWVANRDNPITTPSSATLAITNSSGMVLSDS 100
>02_01_0501 + 3655345-3655722
Length = 125
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 201 LLQRSARSWSAGCSVPAGHVHVCDGSE 281
L + A + +AG VP GHV VC G E
Sbjct: 26 LRPKQAAAAAAGGKVPQGHVPVCVGEE 52
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 382 TLPGLNPARSYAPIGRATWSPRLAPARSPP 471
T P +P P AT +P +APA++PP
Sbjct: 43 TAPAKSPPAPATPAPTATPTPPVAPAKAPP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,498
Number of Sequences: 37544
Number of extensions: 456400
Number of successful extensions: 1773
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -