Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0362
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        68   6e-12
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       66   3e-11
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       44   9e-05
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  31   0.68 
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)                     31   0.90 
SB_57929| Best HMM Match : K-box (HMM E-Value=4.3)                     30   1.6  
SB_8280| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)                    30   2.1  
SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_31952| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_47906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 29   4.8  
SB_3014| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)                28   6.3  
SB_50243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 29/73 (39%), Positives = 44/73 (60%)
 Frame = +3

Query: 258 VHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRTFICSDRESDV 437
           +H+CDGS  E ++            +L + +N ++ RTDP DVARVES+TFIC++ E D 
Sbjct: 175 IHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTDPGDVARVESKTFICTENERDA 234

Query: 438 VPSARAGQKSALG 476
           VP  + G+   +G
Sbjct: 235 VPDFKKGKDGVVG 247



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/32 (53%), Positives = 25/32 (78%)
 Frame = +1

Query: 571 GSCGISLSKIGVEITDSPYVVYSMRVMTRIGA 666
           G  G  ++KIG+++TDS YVV  MR+MTR+G+
Sbjct: 323 GPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGS 354


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 35/93 (37%), Positives = 51/93 (54%)
 Frame = +3

Query: 228 SAGCSVPAGHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRT 407
           +A    PA  +H+CDGS+ E +A             L +++NC+   TDP DVARVESRT
Sbjct: 25  NAKLMTPA-QIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDPQDVARVESRT 83

Query: 408 FICSDRESDVVPSARAGQKSALGNYISPPDYEK 506
           FIC+  + D VP  + G+   L  ++S  +  K
Sbjct: 84  FICTKCKDDAVPHFK-GKVGKLARWMSLEEAHK 115



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +2

Query: 515 DRFPGCMKGRTMYVIPFSMGPVGS 586
           +R+PGCM GRTMYV+PFSMGPVGS
Sbjct: 120 ERYPGCMTGRTMYVLPFSMGPVGS 143



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = +1

Query: 571 GSCGISLSKIGVEITDSPYVVYSMRVMTRIGA 666
           G  G  +SKIG+++TDS YVV  MR+MTR+G+
Sbjct: 139 GPVGSPISKIGIQLTDSEYVVCCMRIMTRMGS 170


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +1

Query: 571 GSCGISLSKIGVEITDSPYVVYSMRVMTRIGA 666
           G  G  +SKIG+E+TDS YVV  MR+MTR+G+
Sbjct: 9   GPVGSPISKIGIELTDSEYVVCCMRIMTRMGS 40



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 548 MYVIPFSMGPVGS 586
           MYV+PFSMGPVGS
Sbjct: 1   MYVMPFSMGPVGS 13


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 413 YERAGFNPGNVCRVCPGQPTVIVLGQ 336
           Y ++ FNP N CRVC    +  VLGQ
Sbjct: 32  YAKSLFNPNNFCRVCNANTSKRVLGQ 57


>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
          Length = 668

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 494 RGGDVVPQGGLLAGASRGDHVALPIG 417
           R GDV+P GG    + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551


>SB_57929| Best HMM Match : K-box (HMM E-Value=4.3)
          Length = 213

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 575 DPSRMVSRTLCVLSY-NQGICRTRLLVIRGGDVVPQGGLLA 456
           D  +M+S+   V+ + N    R  L V+RG +V+ QGGL++
Sbjct: 50  DQIKMISKKFVVVEWLNNAEDRCELTVLRGSEVLRQGGLVS 90


>SB_8280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 575 DPSRMVSRTLCVLSY-NQGICRTRLLVIRGGDVVPQGGLLA 456
           D  +M+S+   V+ + N    R  L V+RG +V+ QGGL++
Sbjct: 53  DQIKMISKKFVVVEWLNNAEDRCELTVLRGSEVLRQGGLVS 93


>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
          Length = 287

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 407 RAGFNPGNVCRVCPGQPTVIVLGQ 336
           ++ FNP N CR+C    +  VLGQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144


>SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 575 DPSRMVSRTLCVLSY-NQGICRTRLLVIRGGDVVPQGGLLA 456
           D  +M+S    V+ + N    R  L V+RG +V+ QGGL++
Sbjct: 142 DQIKMISNKFVVVEWLNNAEDRCELTVLRGSEVLRQGGLVS 182


>SB_31952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +1

Query: 403 ARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRRVRQIP----WLYERTHN--VRDTI 564
           +R Y   GR        P   P W  TSP  + R+ +  +        E T +  V+ T 
Sbjct: 230 SRPYTVWGRIWGVASYVPITIPQWLRTSPSVLVRQVITLLSITDDGTVENTESFFVQLTT 289

Query: 565 LDGSCGISLSKIGVEITDSPYV 630
            DGS  I+   I V ITD+  V
Sbjct: 290 TDGSINITQPNITVSITDNDKV 311


>SB_47906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 563 MVSRTLCVLSY-NQGICRTRLLVIRGGDVVPQGGLLAGASR 444
           M S    V+ + N    R  L V+RG +V+ QGGL++ +SR
Sbjct: 1   MTSNKFVVVEWLNNAEDRCELTVLRGSEVLRQGGLVSVSSR 41


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 358 GWPGQTRQTLPGLNPARSYAP-IGRATWSPRLAPARS 465
           G PGQ R+++  + P R  AP I R T SPR  P R+
Sbjct: 41  GTPGQRRKSV-AVTPPRLSAPHIQRGTASPRSVPPRT 76


>SB_3014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 575 DPSRMVSRTLCVLSY-NQGICRTRLLVIRGGDVVPQGGLLA 456
           D  +M S+   V+ + N    R  L V+RG +V+ QGGL++
Sbjct: 121 DQIKMTSKKFVVVEWLNNAGDRCELTVLRGSEVLRQGGLVS 161


>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
          Length = 373

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 358 GWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARS 465
           G PGQ R+++    P  S   I R T SPR  P R+
Sbjct: 41  GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76


>SB_50243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 563 MVSRTLCVLSY-NQGICRTRLLVIRGGDVVPQGGLLA 456
           M+S+   V+ + N    R  L V+RG +V+ QGGL++
Sbjct: 1   MISKKFVVVEWLNNAEDRCELTVLRGSEVLRQGGLVS 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,161,418
Number of Sequences: 59808
Number of extensions: 460060
Number of successful extensions: 1494
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)