Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0362
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    29   2.2  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    29   3.0  
At1g44880.1 68414.m05142 Ulp1 protease family protein similar to...    29   3.0  
At3g63050.1 68416.m07082 expressed protein                             29   3.9  
At3g22270.1 68416.m02815 expressed protein                             29   3.9  
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST...    28   5.2  
At1g13920.1 68414.m01633 remorin family protein contains Pfam do...    28   5.2  
At5g24316.1 68418.m02864 proline-rich family protein contains pr...    27   9.0  
At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    27   9.0  

>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 385 LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTSPP 492
           LPGL    +S+ P+G    A+  P  APA+ PP     PP
Sbjct: 202 LPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 340 PNTITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPP 492
           P+T     P   +   P   P  S +P    T +P   P+ SPP  T SPP
Sbjct: 99  PSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPP 149


>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
           At4g03970, At3g43010, At2g10350; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1038

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 469 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSY 344
           +D  PAR  G  +LS +EHM V  S  +    +   NQ+ ++
Sbjct: 842 SDSSPARERGKPTLSEAEHMEVLVSLLSQKLATTLTNQRAAF 883


>At3g63050.1 68416.m07082 expressed protein
          Length = 140

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 140 RAAHQTALRGSTKPSPQLATLTPKVRAFVERRL 238
           R+  QT   G T+P P L  +  K  AF++ RL
Sbjct: 101 RSVAQTGAGGVTQPKPLLNDINTKSHAFIQSRL 133


>At3g22270.1 68416.m02815 expressed protein
          Length = 782

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 440 PLGSRRPEVRPGELHLPPGLREG--VSDRFPGCMKGRTMYVIPFSMGP--VGSLSR 595
           P G+R P+  PG LH  P L  G  ++   P  +     ++   S GP   G+L+R
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGGSQLTYSAPSPLSNSGFHLSGLSQGPHYGGNLTR 242


>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
           identical to homeobox protein SHOOT MERISTEMLESS (STM)
           SP:Q38874 from [Arabidopsis thaliana]
          Length = 382

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/81 (20%), Positives = 30/81 (37%)
 Frame = +3

Query: 243 VPAGHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRTFICSD 422
           + AG ++ C  S + A             + L  Y NC      P  VAR+E      + 
Sbjct: 104 IVAGGINPCSSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAA 163

Query: 423 RESDVVPSARAGQKSALGNYI 485
             + + P+   G+   L  ++
Sbjct: 164 AAASMGPTGCLGEDPGLDQFM 184


>At1g13920.1 68414.m01633 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 345

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/75 (32%), Positives = 30/75 (40%)
 Frame = +1

Query: 376 RQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRRVRQIPWLYERTHNVR 555
           RQ  P   P R   P+ R    PR  P   PP  + SP R+  R  ++     E T    
Sbjct: 180 RQRKPVSEPPRIQPPL-RTRSEPRAPPPPPPPLLSPSPLRLPPRETKR--QSSEHTSRKD 236

Query: 556 DTILDGSCGISLSKI 600
           D+  D      LSKI
Sbjct: 237 DSTADAWEKAELSKI 251


>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 436 WSPRLAPARSPPWGTTSPPRITRR 507
           WSPR  P R  P+    PP  TRR
Sbjct: 95  WSPRPIPKRPMPYVPPPPPPPTRR 118


>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 666 RSNSSHDSHRINHVRRIRDFYADLRERDPT-----GPIENGITYI 547
           R NS H    + HV  + DF  DLRE   T     GPI  G+  I
Sbjct: 475 RPNSIHICITLQHVPVVDDFLRDLREAVETVKANPGPITGGLAPI 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,446
Number of Sequences: 28952
Number of extensions: 310543
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)