Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0361
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    66   4e-12
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    27   2.1  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   8.5  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = +2

Query: 287 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 460
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 461 FLTILLGFYFTILQAY 508
           ++TI L F F   QAY
Sbjct: 176 YMTIALSFLFLGGQAY 191



 Score = 34.7 bits (76), Expect = 0.010
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 511 YIEASFTIADRIYGSTFFIAQDFMGIHV 594
           Y  A FTI+D +YG++F+ A    GIH+
Sbjct: 193 YWNAPFTISDSVYGASFYFATGLHGIHI 220



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 147 RDISREGTYQGKHTILVNKGLR*G 218
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 437 FSQTKQRLFLTILLGFYFTILQAYNI*KLLLPLLIEFM 550
           FS     LF   ++GF+   L  +N+ K+  PL+I F+
Sbjct: 71  FSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFL 108


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 425 IENNFSQTKQRLFLTILLGFYFTILQAY 508
           +  ++S T  RL++ ++ G Y + L++Y
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSY 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,986
Number of Sequences: 5004
Number of extensions: 29378
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)