Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0360
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    97   1e-21
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   2.5  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   4.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   5.7  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   10.0 
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   10.0 

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 45/95 (47%), Positives = 60/95 (63%)
 Frame = +3

Query: 252 IFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRH 431
           +++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+     
Sbjct: 175 LYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNI 234

Query: 432 LNNHFSKNHHFGFEAAA*Y*HFVDVVDYFFTFLFI 536
              H +  HH GFE    Y HF DVV + F +L I
Sbjct: 235 YTYHLTNTHHNGFECGIYYWHFCDVV-WLFLYLTI 268



 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +1

Query: 73  HRRLSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENN 231
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARN 167


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 527 KCKEIINYIYKMSISSCSFKSKVMIF 450
           KCK IINY+ K+      ++S ++ +
Sbjct: 363 KCKHIINYMRKLECEKMGYESSLVYY 388


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 372 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 497
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 545 FLINK*KCKEIINYIYKMSISSCSFKSKVMIFRKVII 435
           F + + + KEII+  + +    CS  SK+  FRK ++
Sbjct: 549 FELKEERLKEIISGGFALVDELCSLNSKLWFFRKSVL 585


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 71  SIEDYPQILKLEEYDPLQELHHL 139
           SIED   ++KLE+ DP+  + H+
Sbjct: 276 SIED-KSLIKLEDLDPVDSISHM 297


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 435 NNHFSKNHHFG 467
           NNHF+K HH G
Sbjct: 162 NNHFTKTHHQG 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,213
Number of Sequences: 5004
Number of extensions: 34542
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)