Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0360
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    29   1.9  
03_05_0495 - 24907659-24908747                                         27   7.7  

>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 210 SLIDRK*LLTNKTKIFLTILLGF----YFTILQAYEYIEASFTIADRIYGSTFFIATGFH 377
           +++  K L T +  +FLTILL F    +  IL+ ++ + + + + D    S   +    H
Sbjct: 409 TIVSNKVLPTQRVVVFLTILLNFHAFVFVAILRTFDRLASLYVLDDPKMSSNSTLTDSLH 468

Query: 378 GIHVIIG 398
              ++ G
Sbjct: 469 ERTIVFG 475


>03_05_0495 - 24907659-24908747
          Length = 362

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 342 YGSTFFIATGFHGIHVI----IGTLFLLICYIRHLNNHFSKNHHF 464
           +GS FF+ T  H I V+    +   F L C I+  ++ + + H+F
Sbjct: 238 FGSQFFVLTRKHAIMVVRDMKLWRKFKLPCLIKRRDSCYPEEHYF 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,218,844
Number of Sequences: 37544
Number of extensions: 172776
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)