Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0359
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   3.4  
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   4.5  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 266 RSAKPSL-NIRHELKTQ*C*FENRV*KKKHVTYKKSRTIEILPSKI 132
           R  KP   N  H+L  Q    ++ + K +    KKSRT++IL  K+
Sbjct: 181 RKDKPDFSNGHHDLIKQITELQDMLDKARDQARKKSRTVDILEGKV 226


>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 408 RF*YQHGVSYLKATRT*RRLWI-PLWPITTRST 313
           RF +QH ++  + T+T R+ W+  ++P+   ST
Sbjct: 50  RFMFQHYITDARITKTRRKRWVFGIYPLEVSST 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,391
Number of Sequences: 5004
Number of extensions: 59512
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)