Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0359
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -2

Query: 226 KRSNVNLKIGFKKKNTLLTKNQELLKF--YLPK*YPTIIIIN*KKKC--VRVLVYTRKK 62
           +R+ + L   FK+K      NQ++ KF  YL +   T+  I+ +     + +L + ++K
Sbjct: 292 ERNRLQLLESFKRKVNFYPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQK 350


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 170 KKSRTIEILPSKIISYYYNNKLEKKM 93
           +KS+  +I+ S   +Y YNN   KK+
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNYKKL 99


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 170 KKSRTIEILPSKIISYYYNNKLEKKM 93
           +KS+  +I+ S   +Y YNN   KK+
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNYKKL 99


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 170 KKSRTIEILPSKIISYYYNNKLEKKM 93
           +KS+  +I+ S   +Y YNN   KK+
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNYKKL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,273
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)