Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0359
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28040.1 68415.m03399 aspartyl protease family protein contai...    27   9.1  
At1g67660.1 68414.m07721 expressed protein                             27   9.1  
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea...    27   9.1  

>At2g28040.1 68415.m03399 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 395

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 537 VWTKKTPCYHNY*QTLPV 484
           +WT+  PC H Y QT P+
Sbjct: 89  IWTQCLPCVHCYNQTAPI 106


>At1g67660.1 68414.m07721 expressed protein
          Length = 355

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 173 YKKSRTIEILPSKIISYYYNNKLEKKM 93
           Y K +T  +LP K + YYY  +L+ +M
Sbjct: 228 YNKGKTETVLPWKKVPYYYMPQLQGQM 254


>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 7 WD-40 repeats (PF00400)
          Length = 418

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 205 KIGFKKKNTLLTKNQELLKFYLPK*Y 128
           K G+K+  TL T N  L +F LPK Y
Sbjct: 155 KSGYKQLTTLPTLNDRLRRFALPKNY 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,642
Number of Sequences: 28952
Number of extensions: 293704
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)