Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0356
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 30 1.5
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 29 2.7
02_02_0549 + 11410129-11412180 29 2.7
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 29 3.6
10_02_0061 - 4812903-4812940,4813140-4813536 28 8.3
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 28 8.3
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 8.3
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 28 8.3
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 172 GGSAANAGAHPHLAGLVIALTNGRTSIWELXXXXXXXXXXRLTAGEPXTPRLVSSHLAFG 351
G +A AGA + G+ +A +++ AGEP +PR + A G
Sbjct: 56 GATAIEAGASSGMPGIRLAGVTNSVHSYDVDTRRWTRLHP---AGEPPSPRAAHAAAAVG 112
Query: 352 TANIFSGG 375
T +F GG
Sbjct: 113 TMVVFQGG 120
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 150 VSGFLGASKTLSP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGYLV 4
+ G + A K L+P GD + + V + G + H + + YCCED H LV
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLV 160
>02_02_0549 + 11410129-11412180
Length = 683
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 328 VSSHLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 483
+++ LA +F+G V ++S HL N D IN+NHVG N N
Sbjct: 125 LTTGLANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 577 EPTTNKNAK*ASRSSQRRLRPHVRKLCDHWLTSVFPALT 693
E T + RS R L H+ ++C+ W+ S F L+
Sbjct: 138 EKTAASGGQRRRRSGSRILESHIMQICERWIVSRFVPLS 176
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 41 WRWRPWSW---QKRPSNLTTTTRSVSPGLRVLDAPRKP 145
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2
Query: 242 LPFVSAITSPARWG*APALAAEPPTILV 159
LPF S + + AR G APAL+A P LV
Sbjct: 16 LPFRSRVAAAARPGRAPALSAAPGRRLV 43
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 205 GGEHQRWRQNHPQSW 161
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 248 PSGSFLTDQHPLRDRGSLLENXERPGSSVHTSLLVQ 355
P TD HP+R+ G++L E G S LV+
Sbjct: 225 PEDDTTTDDHPVRNFGTVLNRGEIRGQHAENSHLVK 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,003
Number of Sequences: 37544
Number of extensions: 328585
Number of successful extensions: 1212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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