Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0356
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.1
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 30 2.1
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_21739| Best HMM Match : VWA (HMM E-Value=6.4e-24) 29 4.8
SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01) 29 4.8
SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 28 6.4
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 28 6.4
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 28 8.4
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 204 PSCWTCDRTHEWQNFHL-GASLLTNTRSVTAAHCWRTXNAQARQFT 338
P W + ++ H+ GASLLT ++TAAHC T + A +T
Sbjct: 249 PHSWPWQLSFRYKGSHICGASLLTPGWALTAAHC-LTLSDDASDYT 293
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 424 NNLNNDVAIINHNHVG-FNNNIQRINL 501
NN+NN+ IIN+N++ NNNI IN+
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININI 435
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 430 LNNDVAIINHNHVGFNNNIQRINL 501
+NN+ IIN+N++ NNNI N+
Sbjct: 393 INNNNIIINNNNIIINNNINNNNI 416
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 400 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 498
+++ + N NN NN++ IN+N+ NNNI N
Sbjct: 92 NINNNNNNNNNNNNINNINNNNNNNNNNINNNN 124
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 379 RVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 483
R +S++ + N N++NN+ + IN+N+ NNN
Sbjct: 1759 RNNNNSINNRNNTNNNSINNNNSSINNNNSSINNN 1793
>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 311 GSPAVSRGHGAGVGQ*GSSQMEVLPFVSAITSPAR 207
G+ A + HGA GQ S++ EV P V+A T P++
Sbjct: 24 GANAWHQKHGAKPGQSSSTRKEVKPRVAAKTEPSK 58
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 322 RLVSSHLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNN 438
R +SSH+ G + + GT+ + ++L GS N NN
Sbjct: 233 REISSHVRGGEETMLNNGTKEAQAGLNLPGSQPSTNSNN 271
>SB_21739| Best HMM Match : VWA (HMM E-Value=6.4e-24)
Length = 220
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -1
Query: 258 LPDGSSAIRECDHKSSKMGVSTSVGGRTTHNPGT-VEVSGFLGASKT-LSPGDT-DLVVV 88
L DGS +I + K VST +GG GT + V + ++KT LS GD DL+ V
Sbjct: 6 LVDGSGSIGSSNFDRLKEFVSTVIGGFVISPQGTQISVVVYHSSAKTHLSFGDAQDLISV 65
Query: 87 VKFDGLFCHDHGRQRH 40
+ + G Q +
Sbjct: 66 RRIISSIAYPSGPQTY 81
>SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)
Length = 742
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 322 RLVSSHLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNN 438
R +SSH+ G + + GT+ + ++L GS N NN
Sbjct: 361 REISSHVRGGEETMLNNGTKEAQAGLNLPGSQPSTNSNN 399
>SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 322 RLVSSHLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNN 438
R +SSH+ G + + GT+ + ++L GS N NN
Sbjct: 107 REISSHVRGGEETMLNNGTKEAQAGLNLPGSQPSTNSNN 145
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 412 SYNMNNLNNDVAIINHNHVGFNNN 483
S N NN+NN++ I N+N+ NNN
Sbjct: 126 SDNNNNINNNIIINNNNNNDENNN 149
>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 355 ANIFSGGTRVTTSSVHLHGSYNMN-NLNNDVAIINHNHVGFNNNIQRINLASE 510
A I++GGT + + H N N N NN+ N N+ NN I ++ +
Sbjct: 978 AYIYAGGTATPDTGISEHNDNNNNTNTNNNSDNNNTNNNSDNNTINNYSVIDD 1030
>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 75 GLFCHDHGRQRHQYCCEDL 19
G FCH H R CC+DL
Sbjct: 601 GSFCHIHPTDRFAVCCKDL 619
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 243 SAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGF 139
+A R+CD +S S TTH G +++GF
Sbjct: 267 AANRDCDDSASSTSDKESAPDETTHASGNTKLTGF 301
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 418 NMNNLNNDVAIINHNHVGFNNN 483
N NN+NN+ I N+N++ NNN
Sbjct: 238 NNNNINNNNNINNNNNINNNNN 259
>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 400 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQR 492
H +G NN NN+ IIN+N+ NNI++
Sbjct: 24 HNNGHNITNNNNNNNIIINNNNDNSKNNIKK 54
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 243 NFHLGASLLTNTRSVTAAHC 302
NF G SL+++T VTAAHC
Sbjct: 499 NFICGGSLVSSTWVVTAAHC 518
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,568
Number of Sequences: 59808
Number of extensions: 356272
Number of successful extensions: 2309
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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