Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0356
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.60 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    30   1.4  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    27   9.8  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 367 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 489
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 213 WTCD-RTHEWQNFHLGASLLTNTRSVTAAHCW 305
           WT   R    +  H GAS+L  T  +TAAHC+
Sbjct: 40  WTAALRNKATKAHHCGASILDKTHLITAAHCF 71


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 223 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 104
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 223 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 104
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 545 RLREDLRCCFGSQQPTKTPSEPPGHHNAVCART 643
           R+  D+   + +++PT TP+ P GH + VC  T
Sbjct: 390 RVGADIEIDYETEEPT-TPTRPQGHISHVCELT 421


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 545 RLREDLRCCFGSQQPTKTPSEPPGHHNAVCART 643
           R+  D+   + +++PT TP+ P GH + VC  T
Sbjct: 431 RVGADIEIDYETEEPT-TPTRPQGHISHVCELT 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,326,541
Number of Sequences: 27780
Number of extensions: 238809
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)