Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0354
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 33 0.12
AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical... 33 0.20
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 32 0.27
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 32 0.27
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 32 0.27
U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical pr... 31 0.47
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 30 1.4
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 30 1.4
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 1.9
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.5
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.5
Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 27 7.7
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -2
Query: 225 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLF 52
HDHGGH H + H H G HDH + + + +G D+G R F
Sbjct: 32 HDHGGHD-HGGHDHGGHDHGGWGGHDHHDHHHGGWGGHDHDHGNGGGGGDNGWGYRPF 88
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 222 DHGG--HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 73
DHGG H GH H GH+ G HDH G+ G+++ ++ G +DH
Sbjct: 23 DHGGGDHGGHDHGGHDHGGHDHG-GHDHGGWG---GHDHHDHHHGGWGGHDH 70
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 216 GGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG 91
GGH H H+ G G H H Y+ S + YY G
Sbjct: 195 GGHHHHGGGGHYHGGGGGFHHHHHSSYSGSSSDYSSNNYYGG 236
>AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical
protein Y25C1A.3 protein.
Length = 605
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -3
Query: 173 ATMAGSATITGATLGPSATITGLGTMM---AGSAMITGETAGFSSTFDCSGSTLSTGVAL 3
+T AG +T T A G +AT G+ AG + + G ++T GST STGV +
Sbjct: 306 STAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTASTGVTV 365
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 170 TMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLST 15
T ++T +G+T +A T AG + + G +ST GST+ST
Sbjct: 31 TTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAAGGSTSTTAAGGSTVST 82
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 240 NGRVSHDHGGH-QGHVTNVHWARGHNGGVSHDHRGYTRSLG-NNYRARYYDG 91
+G H H H H N H GH+ G ++D+ G++ S G +N+ +DG
Sbjct: 374 HGHDDHGHDSHGHSHDHNEH-DHGHSHGGNNDNHGHSHSAGSDNHHGHSHDG 424
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 225 HDHGGHQGHVTNVHWARGHNGGVS-HDHRGYTRSLGNNYRARYYDGRISNDHGRN 64
+DHG GH + H + GH+ + HDH G++ N+ + N HG +
Sbjct: 368 NDHGHSHGHDDHGHDSHGHSHDHNEHDH-GHSHGGNNDNHGHSHSAGSDNHHGHS 421
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 240 NGRVSHDHGGH-QGHVTNVHWARGHNGGVSHDHRGYTRSLG-NNYRARYYDG 91
+G H H H H N H GH+ G ++D+ G++ S G +N+ +DG
Sbjct: 392 HGHDDHGHDSHGHSHDHNEH-DHGHSHGGNNDNHGHSHSAGSDNHHGHSHDG 442
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 225 HDHGGHQGHVTNVHWARGHNGGVS-HDHRGYTRSLGNNYRARYYDGRISNDHGRN 64
+DHG GH + H + GH+ + HDH G++ N+ + N HG +
Sbjct: 386 NDHGHSHGHDDHGHDSHGHSHDHNEHDH-GHSHGGNNDNHGHSHSAGSDNHHGHS 439
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = -3
Query: 176 GATMAGSATITGATLGPSAT---ITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTG 12
G+T++GS TG+T P +T TG+ T ++GS++ T + S+ S T+STG
Sbjct: 766 GSTVSGSTGSTGSTNNPGSTDSSTTGIST-VSGSSLSTISGSTGSTVSGSSDMTVSTG 822
Score = 32.3 bits (70), Expect = 0.27
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = -3
Query: 176 GATMAGSATITGATLGPSATITG----LGTMMAGSAMITGETAGFSST---FDCSGSTLS 18
G+T+ G +T++G+T S+ TG G+ ++GS+ T ++ SST SGST+S
Sbjct: 1021 GSTVTGESTVSGSTASTSSGSTGSSTEAGSTVSGSSASTVTSSTGSSTSGESTVSGSTVS 1080
Query: 17 T 15
T
Sbjct: 1081 T 1081
Score = 30.7 bits (66), Expect = 0.82
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -3
Query: 155 ATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLST 15
+TI+G+T+ S T TM AG+ T+G S+ SGS+LST
Sbjct: 1201 STISGSTISGSTGSTESSTMSAGTGSTETSTSGGSTV---SGSSLST 1244
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 176 GATMAGSATITGATLGPSATITGLGTMMAGS-AMITGETAG-FSSTFDCSGSTLSTG 12
G+T+ G +T++G+T +T+T T+ S + ++G T + SGST STG
Sbjct: 1087 GSTITGESTVSGST---ESTVTAESTVSGSSVSTVSGNTGSTITGESTVSGSTGSTG 1140
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 176 GATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFD--CSGSTLST 15
G+T+ G +T++G+T +TIT T+ + G + G + T + SGST ST
Sbjct: 935 GSTVTGESTVSGST---GSTITEGSTISESTMTTVGVSTGSTITGESTVSGSTRST 987
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = -3
Query: 173 ATMAGSA--TITGATLGPSATITGL--GTMMAGSAMIT---GETAGFSSTFDCSGSTLST 15
+T++GS+ T+TG+T+ ++TI+G + + GS T T SS SGST ST
Sbjct: 629 STISGSSASTVTGSTVTEASTISGSTESSTIPGSTESTVSEASTVSGSSVSTVSGSTEST 688
>U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical
protein ZK1290.6 protein.
Length = 507
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 219 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG 91
HGGH G H G +GG H G+ RS + + Y G
Sbjct: 56 HGGHGGSHGGSHGGHGSHGGSYGGHSGHGRSFSTSSGSSGYRG 98
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 231 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 139
V H GGH GHV H H+G H G
Sbjct: 35 VVHTDGGHHGHVDTHHHEESHHGEHHGGHHG 65
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -2
Query: 228 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY---RARYYDGRISNDHGRN 64
+HDHG H + H+ G +HDH G++ ++ A + G DHG +
Sbjct: 75 AHDHG----HAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHHGHAHDHHGHSHEDHGHS 128
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 225 HDHGGHQGHV-TNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 64
H GGH GH+ T+ H H+GG H G+ G +Y + Y HG +
Sbjct: 38 HTDGGHHGHMDTHHHHDSHHHGG---HHGGHH---GGHYESHYESHHHHGHHGHH 86
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 228 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 136
SH HGGH G H+ + H H G+
Sbjct: 55 SHHHGGHHGGHHGGHYESHYESHHHHGHHGH 85
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -2
Query: 234 RVSHDHGGHQGHVTNVHWARGHNG-GVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 58
R H HGGH GH + G +G G S HRG G + R G HG R
Sbjct: 299 RGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRH--GGHGRHGSRSGSPGGRHGHGGR 356
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 225 HDHGGHQGHVTNVHWARGHNG-GVSHDHRG 139
H HGGH GH + G +G G S HRG
Sbjct: 253 HGHGGHGGHGSRSGSPGGRHGHGGSGHHRG 282
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = -2
Query: 228 SHDHGGHQGHVTNVHWARGHNGGVSHD-----HRGYTRSLGNNYRARYYDGRISNDHG 70
SH H GH H A H+G H H G+ S G+ + A + G +HG
Sbjct: 554 SHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGH-HGEHG 610
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = -2
Query: 222 DHGGHQGHVTNVHWARGHNG-----GVSHDHRG 139
+HG H GH H A H+G G H H G
Sbjct: 521 EHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHG 553
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 222 DHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR-ARYYDGRISNDHGRN 64
+H Q H ++R N G ++H G R NN R R Y+ R ++++ +N
Sbjct: 46 NHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNYQQN 99
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 222 DHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR-ARYYDGRISNDHGRN 64
+H Q H ++R N G ++H G R NN R R Y+ R ++++ +N
Sbjct: 46 NHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNYQQN 99
>Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical
protein F58D2.2 protein.
Length = 610
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = -3
Query: 158 SATITGAT-LGPSATITGLGTMMAGSAMIT-----GETAGFSSTFDCSGSTLSTG 12
SAT G T +G AT T + T+ G T T G + T +GST +TG
Sbjct: 553 SATTAGLTGVGFGATTTAMQTISPGKTGATTLGSTSSTTGITETTGTTGSTATTG 607
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 170 TMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLST 15
T ++T +G+T +A T AG + + G +ST GST ST
Sbjct: 42 TTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAAGGSTSTTAAGGSTAST 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,908,514
Number of Sequences: 27780
Number of extensions: 126923
Number of successful extensions: 430
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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