Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0353
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.26
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 30 0.35
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.46
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.46
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 3.3
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 3.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.7
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 26 5.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 5.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.5
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 25 7.5
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 234 SATSLSSSV---TDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*T 64
SA+S SSS + + + ++ STPI++S+ + +S + S GS+
Sbjct: 138 SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSA 197
Query: 63 VGKTTPVHNNNVAVG 19
KT +N+ G
Sbjct: 198 DAKTVSASSNSTISG 212
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 427 VPALTVEPTNCTPPLFVTIVSLAD-YVTTQSGSEQSVL 537
+PAL ++P+ CTP SL D Y + S++++L
Sbjct: 74 MPALRLKPSQCTPLFLAVYTSLRDAYACIHTHSQEAIL 111
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 281 TTPPGPSRIKPVTLLGLXPACRPALPTTCAPKLKPIKWTRPQLPP 147
+ PP PS+ P+ L P +PA P P + P +PP
Sbjct: 156 SAPPIPSKAPPIPS-SLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 233 LXPACRPALPTTCAPKLKPIKWTRPQLPPP 144
L P+ P LP + +L P+ TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 23 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 202
+AT WT + T+ + + SS A+ WS SS + + +T +++ T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
Query: 203 SVT 211
SV+
Sbjct: 982 SVS 984
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = -3
Query: 278 TPPGPSRIKPVTLLGLXPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPT 99
TP S PV LL P+LP PK+K + P S + P
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKD 372
Query: 98 LGTPLTA 78
+G+P TA
Sbjct: 373 VGSPSTA 379
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 276 PTWAQPDQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-QKVAKELSD 100
P ++ + + + S SLSS+ TDN+ A V T +AASV D + +S
Sbjct: 154 PAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTDSASATISS 208
Query: 99 TGNSIDGSV 73
+S SV
Sbjct: 209 VVDSATSSV 217
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 53 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 172
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.7
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -3
Query: 224 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 63
A P +P T PK P PPP L Q T +LP RN LG+ + + P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275
Query: 62 LARPRQSTTITLQSETAS 9
A P Q + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -3
Query: 476 TNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTV 297
TN+ ++ GS + + N +R+G++ + + KNT D SS V
Sbjct: 109 TNAAAIELTGSPIPSFLNRISRIGLAFPTITNALLQHGQKNTSDVD---DSSDSSSDVDE 165
Query: 296 QGLVVT 279
+ L+V+
Sbjct: 166 ETLIVS 171
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -2
Query: 234 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 88
S TS+SSS ++N + +VDS P + V D K KE S+ G S
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKS 414
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 441 SRAYELYASTVRHNRFVGRLCNNSIRLRTISALEVPST 554
S EL+A +R F GR ++SIRL ++++P T
Sbjct: 1873 SETQELFA--IRRASFAGRRNDDSIRLSLRISMDIPPT 1908
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 264 QPDQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQK 121
QPD TGNP A S + + Q + ++ S P +ASV + Q+
Sbjct: 435 QPDNTGNP--QAFSQQAFAQQQQQQQQQLHRT-SNPTSASVTSQNGQQ 479
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.5
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -3
Query: 227 PACRPALPTTCAPKLKPI----KWTRPQL--PPPLLMSQTKKLPRNCPTLGTPLTAVLYR 66
PA PA+P AP L P+ + + P + PP L S LP + P P+ A
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP-SLPMGAPAAP 447
Query: 65 PL 60
PL
Sbjct: 448 PL 449
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 424 LVPALTVEPTNCTPPLFVTIVSLA 495
L+P++T C PP+FV IV ++
Sbjct: 270 LLPSVTFWQNICYPPIFVKIVDVS 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,006
Number of Sequences: 5004
Number of extensions: 68149
Number of successful extensions: 225
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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