Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0352
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.5  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   5.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 443 PICLASSKCSRVCGITPSVAATTNIAPSICA 351
           P+  +S+    +  ITP+V    ++  S+C+
Sbjct: 121 PVTSSSNILQNLADITPNVTPNCDVKSSVCS 151


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 443 PICLASSKCSRVCGITPSVAATTNIAPSICA 351
           P+  +S+    +  ITP+V    ++  S+C+
Sbjct: 121 PVTSSSNILQNLADITPNVTPNCDVKSSVCS 151


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 443 PICLASSKCSRVCGITPSVAATTNIAPSICA 351
           P+  +S+    +  ITP+V    ++  S+C+
Sbjct: 121 PVTSSSNILQNLADITPNVTPNCDVKSSVCS 151


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 44  IILKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTL 148
           ++  R+Y + ++ ERT     VG  G V H   +L
Sbjct: 196 VVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSL 230


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 239 EPSPQGHCQYLHNLFS 192
           EP P  HC   H  F+
Sbjct: 100 EPQPSQHCPRKHGYFA 115


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 660 NVSTSLRSLVIASAHISGLCLQEHREQNL 574
           N  ++L + +I S H++G  ++EH  QNL
Sbjct: 189 NKISNLNTSLIHSTHLNGDIVKEH--QNL 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,722
Number of Sequences: 336
Number of extensions: 3838
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)