Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0352
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 69 3e-12
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 66 2e-11
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 56 2e-08
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 47 2e-05
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 41 0.001
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 40 0.002
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 39 0.005
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 38 0.006
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 36 0.025
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 31 0.72
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 31 0.95
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 31 1.2
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 30 2.2
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 29 2.9
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5) 29 3.8
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 29 3.8
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 29 5.0
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14) 29 5.0
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 28 8.8
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Frame = +1
Query: 256 VAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTR 414
V + T+ +H+ D PGH ++ NMI+G Q D +LV++A G QTR
Sbjct: 212 VGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTR 271
Query: 415 EHLLLAKQIGIQHVVVFINKVD 480
EH +LAK G++H+V+ +NK+D
Sbjct: 272 EHAMLAKTAGVKHLVILVNKMD 293
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Frame = +1
Query: 256 VAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTR 414
V +QT+ + D PGH D+I NMITG AQ D AILVV A G QTR
Sbjct: 3 VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTR 62
Query: 415 EHLLLAKQIGIQHVVVFINKVD 480
EH +L + +G+ ++V INK+D
Sbjct: 63 EHAILVRSLGVTQLIVAINKLD 84
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 304 DCPGHADYIKNMITGTAQMDGAILVVAATDGV-MPQTREHLLLAKQIGIQHVVVFINKVD 480
DCPGH + M+ G A MD A+L++A + PQT EHL + + ++H+++ NK+D
Sbjct: 70 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKID 129
Query: 481 AADEEMVE 504
E +
Sbjct: 130 LVKESQAK 137
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +2
Query: 113 TIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD 211
TIGHV HGK+T+ A++ V + + N+ K GYA+
Sbjct: 27 TIGHVAHGKSTVVKALSGVQTVRFKNELERNITIKLGYAN 66
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 39/84 (46%)
Frame = +1
Query: 229 GEGSRYHYYVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 408
GE ++ + + D PGH + G D I+VVAA D VMPQ
Sbjct: 119 GESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQ 178
Query: 409 TREHLLLAKQIGIQHVVVFINKVD 480
T+E + A+ G+ ++ INK+D
Sbjct: 179 TKEAISHAQAAGVP-IIFAINKID 201
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +1
Query: 304 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 480
D PGHA + G D +LVVAA DGV QT E + A + ++V INK+D
Sbjct: 82 DTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP-LIVAINKID 139
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 86 RTKPHCNVGTI-GHVDHGKTTLTAAI 160
R P V TI GHVDHGKTTL A+
Sbjct: 23 RLMPRPPVVTIMGHVDHGKTTLLDAL 48
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 304 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 483
D PGH D+ ++ +D I+V+ GV QT + + + + I ++VFINK+D
Sbjct: 85 DTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCRMRNIP-MIVFINKMDR 143
Query: 484 ADEEMVELV 510
++ +L+
Sbjct: 144 EGKDAFDLL 152
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 256 VAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQM 360
+A +++T + + D PGH D+IKNMITGT+QM
Sbjct: 27 IALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQM 61
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +1
Query: 304 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 483
D PGH D+ + DGA++VV GV QT L A I+ V+F+NK+D
Sbjct: 105 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDR 163
Query: 484 A 486
A
Sbjct: 164 A 164
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 104 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 253
N+ I HVDHGK+TLT ++ + A+ D +E+ R ITI
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITI 69
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +1
Query: 304 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 480
D PGH + G++ D AILVV G+ PQT E + L K+ VV +NKVD
Sbjct: 684 DTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKKRKTPFVVA-LNKVD 741
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 36.3 bits (80), Expect = 0.025
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 104 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 253
N+G +GHVD GKT+L A++ S A D P+ + RGIT+
Sbjct: 37 NIGVLGHVDSGKTSLAKALSTTAST---------ASFDKNPQSQERGITL 77
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 304 DCPGHADYIKNMITGTAQMDG 366
DCPGHA IK +I G AQ+ G
Sbjct: 108 DCPGHASLIKTII-GGAQIIG 127
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 104 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 253
N + HVDHGK+TL + +V ++ + +D E+ RGIT+
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITV 1991
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +3
Query: 264 CRIPNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTRTF----TTC 431
C P++T A W H P + H + N WC+ + + WC+ T T+ T
Sbjct: 406 CGHPSKTHANWCH--PTKTQANWCHPTKTQAN-WCHPTKTQANWCHPTKTQANLCHPTKT 462
Query: 432 QTDWY 446
Q +WY
Sbjct: 463 QANWY 467
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 273 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTR 416
P +T+A W H P + H + +N WC+ + + WC TNT+
Sbjct: 29 PYKTQANWCH--PTKTQANLNHPIKIQSN-WCHPNKTQANWCYPTNTQ 73
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 370 ILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDAADEE 495
+LVV T GV QT E L++ +I Q +VV +NKVD E
Sbjct: 3 MLVVDVTKGVQTQTAECLVIG-EILCQKMVVVLNKVDLLKPE 43
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 328 IKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHV--VVFINKVDAADEEM 498
++ + T DGA++VV +GV PQT H++L +Q ++++ + +NK+D E+
Sbjct: 91 LEQVSTAVRLCDGALVVVDVVEGVSPQT--HVVL-RQAWLENIRPCLVLNKIDRLITEL 146
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 343 TGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHV--VVFINKVDAADEEM 498
T DGA++VV +GV PQT H++L +Q ++++ + +NK+D E+
Sbjct: 26 TAVRLCDGALVVVDVVEGVSPQT--HVVL-RQAWLENIRPCLVLNKIDRLITEL 76
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 555 HHHIPSQSSTL*SPSHQFYHFLISGIHFVYEHHH 454
HHH PS SS++ H +H S + HHH
Sbjct: 265 HHHHPSSSSSIIIIIHHHHHPSSSSSIIIIHHHH 298
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 555 HHHIPSQSSTL*SPSHQFYHFLISGIHFVYEHHH 454
HHH PS SS + H + S I + HHH
Sbjct: 250 HHHHPSSSSIIIIIHHHHHPSSSSSIIIIIHHHH 283
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 555 HHHIPSQSSTL*SPSHQFYHFLISGIHFVYEHHH 454
HHH PS SS + H H S I ++ HHH
Sbjct: 127 HHHHPSSSSIIIIHHH---HPSSSSIIIIHHHHH 157
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 86 RTKPHCNVGTIGHVDHGKTTLT 151
+ K H N+ IGHVD GK+T T
Sbjct: 3 KEKIHINIVVIGHVDSGKSTTT 24
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 313 GHADYIKNMITGTAQMDGAILVVAAT 390
GHADYI +MIT TA +G++ V +A+
Sbjct: 434 GHADYISHMITTTAD-NGSVTVWSAS 458
>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
Length = 293
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 306 LPRSC*LH*EHDYRHSTNGWCYISSSCN 389
L RSC H D H + GWC ++ SCN
Sbjct: 37 LARSCNGH--TDLHHCSIGWCILARSCN 62
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 273 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTR 416
P +T+A W H P + H + N WC+ + + WC+ T T+
Sbjct: 264 PTKTQANWYH--PTKTQANLNHPIKTQAN-WCHPNKTQANWCHPTKTQ 308
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 555 HHHIPSQSSTL*SPSHQFYH-FLISGIHFVYEHHH 454
HHH PS SS + H +H S I + HHH
Sbjct: 55 HHHHPSSSSIIIIIIHHHHHPSSSSSIIIIIHHHH 89
>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
Length = 239
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 265 VEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREH 420
V+Y Q HYGH D + + ++TG + +G +++ D PQ H
Sbjct: 180 VKYLVLQVHYGHVD-----KFFRTVMTGYRERNGDRVLIGKGDPQKPQVWTH 226
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 273 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCYISSSCN*WCNATNTR 416
P + +A W H P + H + +N WC+ + + WC TNT+
Sbjct: 109 PTKIQANWYH--PTKTQANLNHPIKIQSN-WCHPNKTQANWCYPTNTQ 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,557,976
Number of Sequences: 59808
Number of extensions: 464031
Number of successful extensions: 1320
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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