Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0351
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   3.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   8.8  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.8  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 435 TYPQRH-GHRDISVCKNVLIAHAKAYTCTTMSSRTNKEDSAVSPSVPIRSGLLPILRKIT 611
           TYPQ +   + + +    +    K +  +      + E S++SPS P+   L P+L +  
Sbjct: 494 TYPQLYRSTKRLQIDPKTIKVKVKDFVMSMKRMIPSSERSSISPSKPLSPELKPLLNEAF 553

Query: 612 Q 614
           Q
Sbjct: 554 Q 554


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 304  LASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGYGSVH 429
            LA++  ED  RV         KH   +NEP +   +G    H
Sbjct: 1042 LAAVVGEDVGRVAILQGPMAAKHSTKVNEPAKELLDGINETH 1083


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 432 STYPQRHGHRDISVCKNVLIAHAKAYTCTTMSSRTNKEDSAVSPSVPIRSGLL 590
           S Y   +GH D S        + K  + T++  R N E+    PS+   +G +
Sbjct: 83  SMYMHGYGHLDSSFSSQHSPDNRKRMSSTSVFKRINSEEEGRIPSLTYSAGTM 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,135
Number of Sequences: 5004
Number of extensions: 57114
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)