Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0351
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   1e-19
SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)         88   6e-18
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)                 39   0.005
SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)            32   0.43 
SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.4  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 38/72 (52%), Positives = 52/72 (72%)
 Frame = +3

Query: 39  TGDIAANSYHNVERDVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEM 218
           TGD+A +SYH  + DV+++R LG+  YRFS+SW RILP G    IN  G++YYN LINE+
Sbjct: 82  TGDVACDSYHKYKEDVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINEL 141

Query: 219 LKYGITPMITLF 254
           L Y I P+ T++
Sbjct: 142 LHYNIQPVATIY 153



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 21/36 (58%), Positives = 24/36 (66%)
 Frame = +1

Query: 286 GSFANPLASIWFEDYARVVYTNFGDRVKHWITINEP 393
           GS+ N      F DYA + + NFGDRVK WITINEP
Sbjct: 165 GSWTNSSIIEHFNDYAEICFKNFGDRVKKWITINEP 200



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 509 HLYNNEFKDKQGGQCGITISANSFRPFTDSEEDHAATELRRQAEFGLYAEPIF 667
           H YNN +K  Q G+  I+++     P TDS+ D  A +   Q   G +A PI+
Sbjct: 236 HTYNNTYKATQKGKISISLNGQGAEPLTDSQADKEAADRYMQFYVGHFAVPIY 288


>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 33/77 (42%), Positives = 56/77 (72%)
 Frame = +3

Query: 24  VKDGSTGDIAANSYHNVERDVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNR 203
           + +    DIA +SYH  + D+++++ LG+  YRFS+SW+RILP G  + +N++GV+YYNR
Sbjct: 54  IHNNENADIACDSYHKTDEDIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNR 113

Query: 204 LINEMLKYGITPMITLF 254
           +I+++L   I P+ TL+
Sbjct: 114 VIDKLLAVNIQPVATLY 130



 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 28/64 (43%), Positives = 33/64 (51%)
 Frame = +1

Query: 247 LYSLGLASEAAGTGSFANPLASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGYGSV 426
           LY   L       G + N     WF  YARV +  FGDRV+ W+TINEP E    GYG  
Sbjct: 129 LYHFDLPQALQDKGGWLNSRVIEWFAGYARVCFKLFGDRVRLWLTINEPHEEALNGYGYG 188

Query: 427 HKAP 438
           + AP
Sbjct: 189 NFAP 192


>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
          Length = 398

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +3

Query: 75  ERDVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLF 254
           E+D+E+M+ LGL+V R    W  + P+    + NE  ++   +++    KYGI  ++ + 
Sbjct: 199 EQDMELMQSLGLNVLRLGYMWPGVEPT--RGKYNETYIEVIKKIVTLSAKYGIYVLLDMH 256

Query: 255 TGT-----CLRSCRNW 287
                   C+    NW
Sbjct: 257 QDVMSRKFCVEGFPNW 272


>SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)
          Length = 147

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 509 HLYNNEFKDKQGGQCGITISANSFRPFTDSEEDHAATELRRQAEFGLYAEPI 664
           H+Y+ EF+  Q G+  I  ++  + P +    D AA +   Q   G  A P+
Sbjct: 10  HIYDEEFRGSQHGKLSIVTNSQFYEPKSTKPYDVAAADRGLQWYLGWIAHPV 61


>SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 281 ELGASPIHWLPFGLKTTRAWSTRIS---VTESNIGSPLMSLEKY 403
           +LGA P+ + PFG KT RA     S   +++  +G P  SL+ +
Sbjct: 327 DLGAEPVGFGPFGQKTRRAVLASKSPKQISQLPVGQPGSSLDVF 370


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = +2

Query: 347  RISVTESNIGSPLMSLEKYATRV---TAL--FIKHLSSTPRPSG 463
            RISVT+SN   P  S ++Y+ +V   +AL  F+  + +T R SG
Sbjct: 1261 RISVTDSNDNGPEFSEKRYSAKVDENSALGTFVLQVFATDRDSG 1304


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 549  CPPCLSLNSLLYKCML*RGLSKHSCTQICPDGRGVEDRCFMNRAVTLVAYFSRLI 385
            C  CL L     K +  +  + H  +++ PD + ++ R     A +L  YF R +
Sbjct: 921  CESCLKLEEHFGKALQRKAWALHELSRLHPDDKHIQGRSLC--AASLAQYFDRTL 973


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 569  ANSFRPFTDSEEDHAATELRRQAEFGLYAEP 661
            ANS   FTDSE D  +  +  ++E+GL + P
Sbjct: 1347 ANSNSDFTDSESDTISYTVYSESEWGLASNP 1377


>SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 292 FANPLASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGY 417
           F  PL S  F    +  +TNFGD +KH  T+++ REI   G+
Sbjct: 54  FEMPLVSSVFAHLIKG-FTNFGDIIKH--TMSKCREISKTGF 92


>SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 352 NSCRPRARSLQTKWKPVDWRSSQFLQLLRQVPVNKVIIG 236
           +SC  RA S++T +  +D  S      L +  V K IIG
Sbjct: 80  DSCSKRASSIKTYFNKLDLNSGHLTITLNRKAVTKAIIG 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,867,237
Number of Sequences: 59808
Number of extensions: 423936
Number of successful extensions: 1078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)