Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0350
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    28   0.66 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   1.1  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   4.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   4.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.1  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   8.1  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   8.1  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   8.1  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 335 LWPL*QVHPLLPLFVHSDSSADIRMRHTGTFS 240
           LW +   HP+LPLF  S     +R+ ++ T++
Sbjct: 293 LWSV-AAHPMLPLFATSSQDKSVRIYNSNTYN 323


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 283 IPPRTSVCGTPEHFHQQKNIHTNILD 206
           +PPRT +    +  HQQ+N++ ++LD
Sbjct: 450 LPPRTDIVLFIKPTHQQENVYGHVLD 475


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +1

Query: 82  FYFGDRSVNTDGV-LNYVNYFSDVIFMTPALRS--IKLLTEAGHDQVYLYEYSFVDENVP 252
           FY G  +  TD +  N+V      IF   +     I+LL  +GH   Y+Y    VD   P
Sbjct: 501 FYAGFGNRITDAISYNHVRVPPTRIFTINSAGEVHIELLQRSGHRSSYVYMNELVDHFFP 560

Query: 253 VCRIRMSAEESLCTN 297
              +    E S  T+
Sbjct: 561 PIEVSTRDEVSSFTD 575


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -3

Query: 249 NIFINKRIFIQIYLIVTSLC**FNRSKGWCHEYNITKIVHIIQNAISVH*TITKIEFFDN 70
           +  +   IF+ +Y I   +   F R  GW  E+ +      I  A++V  T T + F  N
Sbjct: 277 SFMVGSIIFLVVYWIGIFIWIGFGRMLGWSDEWQL-----YINTAVAVELTFTSV-FLQN 330

Query: 69  FRY 61
            R+
Sbjct: 331 VRH 333


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 269 CPRRNHCAQTMAVVDGPAIAAREDVVDTEEYREMRKTM 382
           CPR N C QT+ V       ARED+V  +E   +RK +
Sbjct: 230 CPR-NDCLQTVDVAFQFLNVAREDLVG-QENSALRKLL 265


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 438 SALINRTHPVVMKLFHNVL 382
           SAL+NR  PV+ KLF +++
Sbjct: 858 SALVNRISPVLDKLFVSII 876


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/39 (23%), Positives = 24/39 (61%)
 Frame = +1

Query: 25  HLHFKNESQKKKVAKIIKEFYFGDRSVNTDGVLNYVNYF 141
           HL  K++++KK   K+ ++  +  ++++   V+  +NY+
Sbjct: 136 HLSSKSQNEKKARVKVFRQEIWALKTLSHPCVVQLLNYY 174


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 VNYFSDVIFMTPALRSIKLLTEAGHDQV 213
           V  F D I ++ ALR IK L E+ HD V
Sbjct: 44  VGQFKDGIDIS-ALREIKFLRESRHDNV 70


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 314 HPLLPLFVHSDSSADIRMRHTGTFS 240
           HP LPLF       D+++ H   +S
Sbjct: 662 HPSLPLFCSGSDDGDVQVFHGRVYS 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,139
Number of Sequences: 5004
Number of extensions: 37117
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)