Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0350
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064...    31   0.50 
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361...    27   8.1  

>02_04_0489 +
          23404757-23404812,23406170-23406296,23406418-23406487,
          23406997-23407102,23407185-23407296,23407792-23407914,
          23408017-23408176,23408300-23408376,23408474-23408526,
          23408700-23408754,23409049-23409683,23410412-23410733,
          23410838-23411146,23411468-23411470
          Length = 735

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 83 NSLIIFATFFFWLSFLKCKCS 21
          NS +  A FFFWL F  CK S
Sbjct: 2  NSFLFSALFFFWLLFCSCKAS 22


>10_01_0330 +
           3614562-3614574,3614676-3615118,3617700-3617825,
           3618379-3618786,3618871-3619311,3619399-3619779
          Length = 603

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 305 VVDGPA-IAAREDVVDTEEYREMRKTMRTLWNNFIT 409
           V DG   I   ++V+D EEY      M   W NF T
Sbjct: 170 VTDGKRQIVEVDNVIDEEEYNHNLHVMGNAWKNFKT 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,966
Number of Sequences: 37544
Number of extensions: 221495
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)