Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0350
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               31   0.67 
SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_38803| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  

>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = +1

Query: 157 MTPALRSIKLLTEAGHDQVYLY-EYSFVDENVPVCRIRMSAEESLCTNNGSSGWTCYSGQ 333
           + P LR++ ++     + + L+ E    + N    R+R S    LCT +  S W+ Y+ +
Sbjct: 588 LLPNLRALGIIQSCTEEFLALFLEVLHQELNTAKPRMRRSLTNELCTKDAESWWSLYTDK 647

Query: 334 RR---CSGY*RI*RNEKDNENVVE*FHNNRVSSIY*STSDPPSLS 459
                   +    RN+ DNE +      ++ +  Y     PP LS
Sbjct: 648 NESIIVDTFQGQFRNKSDNETISP--SKDKQNKYYAFEPVPPPLS 690


>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 79  EFYFGDRSVNTDGVLN---YVNYFSDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDENV 249
           +F + D     + V N   Y++ +SD +F+ PA+     L  AGH   ++Y++    EN+
Sbjct: 345 KFEYQDHRDPNNSVTNRQLYMDLYSDSMFIAPAIFEANALASAGH-ATFMYKF----ENL 399

Query: 250 P 252
           P
Sbjct: 400 P 400


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -1

Query: 59  FFFWLSFLKCKCSRE-EISC 3
           FFFW+ +L+ K SRE E++C
Sbjct: 132 FFFWVPYLRVKDSRECELNC 151


>SB_38803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 275 RRNHCAQTMAVVDGPAIAAREDVVDTEEYREMRKTMRTL 391
           R +HC  T AVV     A R  +V+TE     RK  R +
Sbjct: 85  RLSHCEWTPAVVTDLHSAPRSHMVNTENGHVFRKNRRVI 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,735
Number of Sequences: 59808
Number of extensions: 282254
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)