Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0350
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006730-11|ABO16462.1| 327|Caenorhabditis elegans Hypothetical... 32 0.19
EF445111-1|ABQ01578.1| 251|Caenorhabditis elegans scramblase 3 ... 31 0.59
AF099000-1|AAK71876.1| 334|Caenorhabditis elegans Serpentine re... 31 0.59
AF078785-2|AAC27093.1| 266|Caenorhabditis elegans Hypothetical ... 31 0.59
AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine re... 31 0.59
AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine re... 31 0.59
AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine re... 30 0.78
AC006621-2|AAK68262.2| 544|Caenorhabditis elegans Hypothetical ... 30 1.0
Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical p... 29 1.4
Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical p... 29 1.4
AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine re... 29 1.4
AF016450-3|AAB65992.3| 811|Caenorhabditis elegans Hypothetical ... 29 2.4
Z46787-2|CAA86740.1| 262|Caenorhabditis elegans Hypothetical pr... 28 3.2
U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 27 9.7
U56965-5|AAB52668.1| 478|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF303267-1|AAG50225.1| 478|Caenorhabditis elegans kynureninase ... 27 9.7
>AC006730-11|ABO16462.1| 327|Caenorhabditis elegans Hypothetical
protein Y27F2A.11 protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -3
Query: 153 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLLLAFVFEVQMQQGGNLV 4
Y+I ++ +I + S++ + K DNFRYFLL F+VQ+ N++
Sbjct: 16 YHIIGVISMIVDLFSIYLILFKSNKLDNFRYFLL---NFQVQLNFEKNII 62
>EF445111-1|ABQ01578.1| 251|Caenorhabditis elegans scramblase 3
protein.
Length = 251
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Frame = -2
Query: 319 RSIHYCHCLC--------TVIPPRTSVCGTPEHFHQQKNIHTNILDRDQPLLVI 182
R H C C C T+ P + GT H N H N+LD+D+ LL +
Sbjct: 117 RERHCCGCCCWLGSTNKSTIESPSMGLLGTVLLGHGCTNSHCNVLDKDEELLFL 170
>AF099000-1|AAK71876.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein60 protein.
Length = 334
Score = 30.7 bits (66), Expect = 0.59
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -3
Query: 153 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 52
Y++ ++ I+ ++ S++ + + + DNFRYFLL
Sbjct: 16 YHVIGVISILFDSFSIYLVLFRSDKIDNFRYFLL 49
>AF078785-2|AAC27093.1| 266|Caenorhabditis elegans Hypothetical
protein C04E12.7 protein.
Length = 266
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Frame = -2
Query: 319 RSIHYCHCLC--------TVIPPRTSVCGTPEHFHQQKNIHTNILDRDQPLLVI 182
R H C C C T+ P + GT H N H N+LD+D+ LL +
Sbjct: 117 RERHCCGCCCWLGSTNKSTIESPSMGLLGTVLLGHGCTNSHCNVLDKDEELLFL 170
>AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine
receptor, class i protein61 protein.
Length = 331
Score = 30.7 bits (66), Expect = 0.59
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -3
Query: 153 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 52
Y++ ++ ++ ++ S++ + + E DNFRYFLL
Sbjct: 16 YHVIGVISLLFDSFSIYLILFRSEKIDNFRYFLL 49
>AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine
receptor, class i protein63 protein.
Length = 334
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 153 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 52
Y++ ++ +I ++ S++ + K DNFRYFLL
Sbjct: 16 YHVIGVISLIFDSFSIYLILFKSSKIDNFRYFLL 49
>AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein62 protein.
Length = 334
Score = 30.3 bits (65), Expect = 0.78
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 153 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 52
Y++ I+ ++ ++ S++ + K DNFRYFLL
Sbjct: 16 YHVIGIISLLFDSFSIYLILFKSSKIDNFRYFLL 49
>AC006621-2|AAK68262.2| 544|Caenorhabditis elegans Hypothetical
protein C52A10.2 protein.
Length = 544
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 130 VNYFSDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDENVPV 255
V F D F A +++ L + G+ VYLY +++ + N P+
Sbjct: 391 VEIFGDYYFSVGAFDTVRSLVKYGNT-VYLYSFNYFNPNTPI 431
>Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 317 PAIAAREDVVDTEEYREMRKTMRTLWNNFITTG*VRFIRALATR 448
PAI +D E YREMRK ++ W F + +I +A R
Sbjct: 819 PAIFEGQDDPQFEVYREMRKNCKSNWKKFSRRTNLMWIVYIANR 862
>Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 317 PAIAAREDVVDTEEYREMRKTMRTLWNNFITTG*VRFIRALATR 448
PAI +D E YREMRK ++ W F + +I +A R
Sbjct: 819 PAIFEGQDDPQFEVYREMRKNCKSNWKKFSRRTNLMWIVYIANR 862
>Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 317 PAIAAREDVVDTEEYREMRKTMRTLWNNFITTG*VRFIRALATR 448
PAI +D E YREMRK ++ W F + +I +A R
Sbjct: 819 PAIFEGQDDPQFEVYREMRKNCKSNWKKFSRRTNLMWIVYIANR 862
>AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine
receptor, class i protein54 protein.
Length = 335
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 153 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 52
++I + +I + S++ + K E DNFRYFLL
Sbjct: 16 FHIIGSISLIADIFSIYLILFKSEKIDNFRYFLL 49
>AF016450-3|AAB65992.3| 811|Caenorhabditis elegans Hypothetical
protein B0238.13 protein.
Length = 811
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 130 VNYFSDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDENVPV 255
V + D F A +++ L + G+ VYLY +++ + N P+
Sbjct: 717 VEIYGDYYFSVGAFDTVRSLVKYGNT-VYLYSFNYFNPNTPI 757
>Z46787-2|CAA86740.1| 262|Caenorhabditis elegans Hypothetical
protein C16C10.2 protein.
Length = 262
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 10 ISSLLHLHFKNESQKKKVAKIIKEFYFGDRSVNTDG 117
+ L ++ FK +KKK+ ++ E +F D S+N G
Sbjct: 103 LKDLEYVKFKLNEEKKKIDEMKGELHFADSSLNGKG 138
>U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical
protein C45G9.6a protein.
Length = 542
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 232 FVDENVPVCRIRMSAEESLCTNNGSSGWTCYSGQR 336
FVD NV VCR M + C + C SGQR
Sbjct: 401 FVDRNVTVCRYDMFKKHRQCLYHSD----CISGQR 431
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 107 FTERSPK*NSLIIFATFFFWLSFLKCKCS 21
FT+R+P +++++ FF+ F C+ S
Sbjct: 4 FTQRAPNYTAILVYFNGFFFSEFWSCEMS 32
>U56965-5|AAB52668.1| 478|Caenorhabditis elegans Hypothetical
protein C15H9.7 protein.
Length = 478
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Frame = +1
Query: 91 GDRSVNTDGVLNYVN---------YFSDVIFMTPALRSIKLLTEAGH 204
G+ ++ T+ +L+Y+ +FS + + T L ++ +TEAGH
Sbjct: 208 GEETLRTEDILDYIEKNGDEIAIVFFSGIQYYTGQLFDMRAITEAGH 254
>AF303267-1|AAG50225.1| 478|Caenorhabditis elegans kynureninase
protein.
Length = 478
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Frame = +1
Query: 91 GDRSVNTDGVLNYVN---------YFSDVIFMTPALRSIKLLTEAGH 204
G+ ++ T+ +L+Y+ +FS + + T L ++ +TEAGH
Sbjct: 208 GEETLRTEDILDYIEKNGDEIAIVFFSGIQYYTGQLFDMRAITEAGH 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,879
Number of Sequences: 27780
Number of extensions: 213822
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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