Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0350
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79880.1 68414.m09333 La domain-containing protein contains P...    31   0.55 
At5g03590.1 68418.m00318 GDSL-motif lipase/hydrolase protein-rel...    28   2.9  
At5g56050.1 68418.m06993 hypothetical protein                          27   5.1  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    27   6.8  

>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 399

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 34  FKNESQKKKVAKIIKEFYFGDRSVNTDGVLN 126
           F  E+ KK + ++  EFYF D ++ TDG LN
Sbjct: 5   FNEETAKKLLTQV--EFYFSDSNLPTDGFLN 33


>At5g03590.1 68418.m00318 GDSL-motif lipase/hydrolase
           protein-related
          Length = 231

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 13  SSLLHLHFKNESQKKKVAKIIKEFYF---GDRSVNTD 114
           S L+ LH  NES KK VAK+ KE  F   GDR V  D
Sbjct: 117 SDLVRLH--NESLKKAVAKLNKEDKFRTKGDRFVIVD 151


>At5g56050.1 68418.m06993 hypothetical protein 
          Length = 283

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 19  LLHLHFKNESQKKKVA--KIIKEFYFGDRSVNTDGVLNY 129
           LL L+F N ++K  V    ++ E +F D  + T GVL +
Sbjct: 158 LLQLNFTNPNKKLNVRFENLMVELWFADTKIATQGVLPF 196


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 242  KMFRCAAYGCPRRNHCAQ 295
            K   CAA+GC  RN+CA+
Sbjct: 1199 KWLWCAAFGCLVRNYCAR 1216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,923,458
Number of Sequences: 28952
Number of extensions: 187910
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)