Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0349
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   0.35 
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    27   1.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   1.4  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   4.4  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    24   7.6  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 36  KSLIPL*QTCKYFICFPLLIYCNFIFLNK 122
           K LIPL QT   F+  P L YC   F++K
Sbjct: 429 KVLIPLHQTKSVFLYHPQLTYCIVQFIDK 457


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  FQSSSVKKKSLIPL*QTCKYFICFPLL 92
           F++    +K L PL    KY  CFPLL
Sbjct: 92  FETPFFMRKELFPLNPHLKYTSCFPLL 118


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = -1

Query: 274  YISKLYLFRLT*YLLSLMVIVPISQLWLHRFSKLHRFYRLNNNLWHSHQPYLFRNMKLQ* 95
            Y+ KL L  +T   ++  +      LW      + +FY + + L  +    L  + KLQ 
Sbjct: 1195 YLRKLLLKLITDLYINHDITKECFLLW-----DMKQFYEIRSTLLQNASGVLVEDPKLQK 1249

Query: 94   ISKGKQIKYLQVCYNGI 44
             +KG+    L+V ++G+
Sbjct: 1250 NAKGQYTSKLKVYFSGL 1266


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 233 IKFNGYCAYKPIVATSIFEITSILS 159
           +K N +C Y PI  TSI    SI S
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRS 329


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -2

Query: 189 IDFRNYIDFIV*IITYGIHINLIYLGI*NYNKLVKGSK*NIYKFVTMGLNFFFSQKTIE 13
           IDF N  D+I  +  YG+ I L      N++     S   +   +T  L F     ++E
Sbjct: 435 IDFSNLQDYINSLANYGLPIWLTEFACTNWDDSNLPSLDEVKTLMTSALGFLDGHGSVE 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,261,795
Number of Sequences: 5004
Number of extensions: 23267
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)