Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0349
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19104| Best HMM Match : 5TM-5TMR_LYT (HMM E-Value=7.5)              31   0.33 
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.58 
SB_43584| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)              29   0.77 
SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)                   29   0.77 
SB_43815| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)              27   3.1  
SB_24949| Best HMM Match : zf-HYPF (HMM E-Value=4.9)                   27   3.1  
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    26   9.4  
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                26   9.4  

>SB_19104| Best HMM Match : 5TM-5TMR_LYT (HMM E-Value=7.5)
          Length = 111

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  QTCKYFICFPLLIYCNFIFL 116
           Q CKYF CFP + Y N + L
Sbjct: 3   QNCKYFFCFPFVYYRNSLAL 22


>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 45   IPL*QTCKYFICFPLLIYCNFIFL 116
            +P  Q CKYF CFP + Y N + L
Sbjct: 1115 LPDDQNCKYFFCFPFVHYRNSLGL 1138


>SB_43584| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)
          Length = 306

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  QTCKYFICFPLLIYCNFIFL 116
           Q CKYF CFP + Y N + L
Sbjct: 3   QNCKYFFCFPFVHYRNSLGL 22


>SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)
          Length = 630

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  QTCKYFICFPLLIYCNFIFL 116
           Q CKYF CFP + Y N + L
Sbjct: 266 QNCKYFFCFPFVRYRNSLGL 285


>SB_43815| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)
          Length = 303

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 63  CKYFICFPLLIYCNFIFL 116
           CKYF CFP + Y N + L
Sbjct: 2   CKYFFCFPFVHYRNSLGL 19


>SB_24949| Best HMM Match : zf-HYPF (HMM E-Value=4.9)
          Length = 126

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 63  CKYFICFPLLIYCNFIFL 116
           CKYF CFP + Y N + L
Sbjct: 58  CKYFFCFPFVHYRNSLGL 75


>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 63  CKYFICFPLLIYCNFIFL 116
           CKYF CFP + Y N + L
Sbjct: 49  CKYFFCFPFVHYRNSLGL 66


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 192 SHNWLIGTITIKLNKYYVSLKRYSLL 269
           SH + IG +TI  N   VSL+R +L+
Sbjct: 354 SHKYKIGQLTITTNSNLVSLQRDNLV 379


>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 63  CKYFICFPLLIYCNFIFL 116
           C+YF CFP + Y N + L
Sbjct: 2   CEYFFCFPFVHYRNSLGL 19


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,520,520
Number of Sequences: 59808
Number of extensions: 147043
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)