Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0349
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    26   8.3  
U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbona...    26   8.3  
U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbona...    26   8.3  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    26   8.3  

>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 NYNKLVKGSK*NIYKFVTMGLNFFFS 28
           N NKL KG+  N+  FV   LN F S
Sbjct: 755 NQNKLKKGTSHNLDLFVVALLNMFLS 780


>U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform b protein.
          Length = 797

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 NYNKLVKGSK*NIYKFVTMGLNFFFS 28
           N NKL KG+  N+  FV   LN F S
Sbjct: 593 NQNKLKKGTSHNLDLFVVALLNMFLS 618


>U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform c protein.
          Length = 826

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 NYNKLVKGSK*NIYKFVTMGLNFFFS 28
           N NKL KG+  N+  FV   LN F S
Sbjct: 622 NQNKLKKGTSHNLDLFVVALLNMFLS 647


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 NYNKLVKGSK*NIYKFVTMGLNFFFS 28
           N NKL KG+  N+  FV   LN F S
Sbjct: 755 NQNKLKKGTSHNLDLFVVALLNMFLS 780


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,744,042
Number of Sequences: 27780
Number of extensions: 125053
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)