Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0349
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   0.77 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.5  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 169 RFYRLNNNLWHSHQPYLFRNMK 104
           R +R+ NNL++ + PY   N+K
Sbjct: 217 RSWRITNNLFYPYPPYGTFNIK 238


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -1

Query: 166 FYRLNNN----LWHSHQPYLFRNMKL 101
           F+ L NN     W+ HQP   +NM +
Sbjct: 319 FFGLVNNSAIGCWNEHQPLQRQNMDM 344


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 239 ILIKFNGYCAYKP 201
           +++K NG C Y P
Sbjct: 128 VVVKNNGTCLYVP 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,066
Number of Sequences: 438
Number of extensions: 1470
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)