Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0349
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49380.1 68414.m05535 cytochrome c biogenesis protein family ...    28   1.9  
At2g12610.1 68415.m01363 expressed protein ; expression supporte...    27   2.5  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    26   5.9  

>At1g49380.1 68414.m05535 cytochrome c biogenesis protein family
           contains Pfam PF05140: ResB-like family; similar to CCS1
           (GI:2749939) [Chlamydomonas reinhardtii]; similar to
           Ccs1 (GI:6137102) [Synechococcus sp. PCC 6301]
          Length = 547

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 220 VIVPISQLWLHRFSKLHRFYRLNNNLWHSHQPYLFRNMKLQ*ISKGKQ 77
           +IV ++   LH FSK+H F R ++ L  +    L  N KLQ    G Q
Sbjct: 1   MIVTLNPKILH-FSKIHPFSRPSSYLCRTRNVSLITNCKLQKPQDGNQ 47


>At2g12610.1 68415.m01363 expressed protein ; expression supported
           by MPSS
          Length = 419

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 202 QLWLHRFSKLHRFYRLNNNLWHSHQPYLFRNMKLQ*ISKGK 80
           Q+ L  + K   F  +NN  W   +PYL++  K+   SKG+
Sbjct: 33  QVSLDAYKKKKFFKDVNNYYWD--EPYLYKKRKMMGYSKGE 71


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 133 HQPYLFRNMKLQ*ISKGKQIKYLQVCYNGIKLFFFTEDD 17
           H P  F  +K+    KG   K+LQ    GI L FF+ DD
Sbjct: 191 HLPEAFPPIKVP-FQKGAGQKFLQAPGTGIDLGFFSLDD 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,079,470
Number of Sequences: 28952
Number of extensions: 104707
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)