Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0346
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)             29   2.2  
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 347 IFNFLLDLM--SCEVLIVSLK*IKRTIPNIFSINKVIESSFSITYFTSKFYDSLDTLKSA 520
           +  F+L L+  S  ++I++ K +KRT+ ++F +N  +     I +     YD L TL + 
Sbjct: 15  LVTFVLGLVGNSLVLVIITKKRLKRTVNDMFIMNLAVTDLTLIFFIPLNIYDLLRTLPAT 74

Query: 521 L 523
           +
Sbjct: 75  V 75


>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -1

Query: 381 SQLIKSNKKLKIQIETRKVKKSYLKIN*LHQT*IIQNFSHCP*FIK 244
           +++ KS   +K+ I+TRK+K  Y+K N L +  +++  +H P  +K
Sbjct: 35  NRVTKSKVAVKV-IDTRKIKDDYVKRNILREALLLKR-AHHPNIVK 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,962
Number of Sequences: 59808
Number of extensions: 204337
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)