Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0346
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 535 IISWLLLFTIYSIIKYCR 588
           I+ WL  FT+Y +  +CR
Sbjct: 19  ILCWLPFFTMYLVRAFCR 36


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 535 IISWLLLFTIYSIIKYCR 588
           I+ WL  FT+Y +  +CR
Sbjct: 467 ILCWLPFFTMYLVRAFCR 484


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 399 KLTIKTSQLIKSNKKLKIQIETRKVK 322
           K+T    Q+++ N KLK  +   KVK
Sbjct: 10  KITANRQQVMRQNMKLKRHLAQDKVK 35


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 210 TSLNYTNLL*F*IKQYVINYKETCLMITFKKHIQNIQRTS 91
           T L    +L F I    ++Y+ +CL+  FK+     +R S
Sbjct: 47  TKLKIIEILQF-ILDVRLDYRISCLLSIFKQEFDETERAS 85


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 210 TSLNYTNLL*F*IKQYVINYKETCLMITFKKHIQNIQRTS 91
           T L    +L F I    ++Y+ +CL+  FK+     +R S
Sbjct: 15  TKLKIIEILQF-ILDVRLDYRISCLLSIFKQEFDETERAS 53


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 372 IKSNKKLKIQIETRKVK 322
           +K NKK++I  E  KVK
Sbjct: 259 LKPNKKVRISNEMSKVK 275


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 467 WKMMILLLYLSRIYSELYVLFIL 399
           W+M+ L++ ++ +   +Y+ FI+
Sbjct: 399 WQMICLIVVIALVSIIMYIAFII 421


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 398 NLQLKLHSSLNLT 360
           NL L LH+SLN T
Sbjct: 251 NLNLSLHASLNHT 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,198
Number of Sequences: 438
Number of extensions: 2142
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)