Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0346
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43670.1 68416.m04655 copper amine oxidase, putative similar ...    28   5.6  
At5g35940.1 68418.m04325 jacalin lectin family protein similar t...    27   7.4  
At3g18310.1 68416.m02330 expressed protein                             27   7.4  
At1g60095.1 68414.m06771 jacalin lectin family protein contains ...    27   7.4  
At1g57570.1 68414.m06533 jacalin lectin family protein similar t...    27   9.8  

>At3g43670.1 68416.m04655 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 687

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
 Frame = -1

Query: 465 ENDDSITLFIENIFGIV--RFIYFKLTIKTSQLIKSNKKLKIQIETRKV------KKSYL 310
           + DDS  L  EN+ G+V   FI F L +       +N  +K+ +E +++      +KSYL
Sbjct: 463 KEDDSGPLISENVIGVVHDHFISFHLDMDIDG-SANNSFVKVHLEKQRLPPGESRRKSYL 521

Query: 309 KI 304
           K+
Sbjct: 522 KV 523


>At5g35940.1 68418.m04325 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 444

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 453 SITLFIENIFGIVRFIYFKLTIKTSQLIKSNKKLKIQI 340
           SI  + +   G+++ I FK  +KTS ++  NK  K  +
Sbjct: 79  SIEGYYDKSTGVIQSIQFKTNVKTSDMMGFNKGTKFSL 116


>At3g18310.1 68416.m02330 expressed protein
          Length = 873

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 514 KCPGSSTIISWLLLFTIYSIIKYC-RFNET 600
           KC  SS  + ++L++++YSI  YC +++E+
Sbjct: 178 KCSSSSGELGYVLVYSLYSIHWYCVKYDES 207


>At1g60095.1 68414.m06771 jacalin lectin family protein contains
           similarity to myrosinase-binding protein homolog
           [Arabidopsis thaliana] GI:2997767;
          Length = 531

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 423 GIVRFIYFKLTIKTSQLI--KSNKKLKIQIETRKV 325
           G+++ I FK  IKTS+LI  K  +K  +    +K+
Sbjct: 178 GVIQGIQFKTNIKTSELIGDKKGRKFSLAANGKKI 212


>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 614

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 423 GIVRFIYFKLTIKTSQLI--KSNKKLKIQIETRKV 325
           G+++ + FK  IKTS+L+  K  KK  +  + +K+
Sbjct: 260 GVIQALQFKTNIKTSELLGYKKGKKFSLVDKRKKI 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,521,229
Number of Sequences: 28952
Number of extensions: 145798
Number of successful extensions: 270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)