Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0345
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    29   0.41 
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   0.94 
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   3.8  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   5.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   6.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   8.8  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
 Frame = -3

Query: 465 APVKLPAWQCLNRI---TREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLP-PNRVSN 298
           +P +   W CL  +     +F +A     + P+ T   +   P     RA LP P     
Sbjct: 335 SPSEFATWACLADVYLHLEDFKSALLALNSCPMYTYYERDAYPLPPSARAHLPFPVNFPK 394

Query: 297 ETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSF 178
           E ++V      + +   T +T +  PY ARL S S   +F
Sbjct: 395 EELEV----ENNAQNGYTVSTEITDPYLARLPSPSLRGTF 430


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 345 ADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG---SSFP 175
           A ++ R P   NR SN      +  RRS   SP+   P+ +   +  + S+TG    + P
Sbjct: 312 ASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSP 371

Query: 174 ADSPKP 157
             +P P
Sbjct: 372 TAAPPP 377


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 240 HKWEIFRAIVAEKPLLSLFHYLLGW 314
           HK +IF++    +P   LFHYL G+
Sbjct: 307 HKNDIFKSSQKHQPRNWLFHYLFGF 331


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 324 PLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 151
           P P     N+T    + ++ +++++ T+   L S    RL +SS  SS PA   +  P
Sbjct: 242 PSPIEEDYNDTKARRITRKGTKKKTVTFDPSLESVPQKRLNASSNVSSNPAKKTRVSP 299


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 461 QSNSPPGSV*TGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPT 309
           QS SP   +    + +       PP ++  ++ERNT   PI     RF  T
Sbjct: 469 QSTSPSSKITKHLKDASSTYSINPPSYNKPKVERNTTADPIF-VGKRFYST 518


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 582  SPYAY*TSGSSQLLPFCSTRGFV 514
            SPYA+ T  S+ L PF STR ++
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSYM 1233


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 461 QSNSPPGSV*TGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPT 309
           QS SP   +    + +       PP ++  ++ERNT   PI     RF  T
Sbjct: 469 QSTSPSSKITKHLKDASSTYSINPPSYNKPKVERNTTADPIF-VGKRFYST 518


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -3

Query: 339 IIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPK 160
           +++ +PLP     + ++ V          +PT A+ L  P +A L SS   +    +SP+
Sbjct: 598 VLNTSPLPKTPEKDRSLNVT-----PSSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652

Query: 159 PVPLAVVSLD 130
                 V+LD
Sbjct: 653 REKKNRVTLD 662


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = +1

Query: 256  FARSSLKNHYFHCFITYSVGRKRCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVQ 435
            +  + ++ HY   F  YS+  K    D  G      + R EW +    R  +K  R+  +
Sbjct: 1954 YGHAEVQAHYGQDFREYSILTKSFEKDEDGNVKGINTVRIEWTKNSKGRWIMKEIRNSEE 2013

Query: 436  TLP 444
              P
Sbjct: 2014 FFP 2016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,796
Number of Sequences: 5004
Number of extensions: 54070
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)