Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0345
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 31 0.55
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.73
12_01_0843 + 7891622-7892524 31 0.97
05_07_0183 + 28251548-28252009,28252172-28252594 30 1.7
11_06_0556 - 24950873-24951078,24951174-24951378,24951458-249515... 29 2.2
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987... 29 3.9
08_01_0878 + 8624616-8624761,8625861-8626274,8626895-8626945,862... 29 3.9
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.9
01_01_1195 - 9567023-9567789,9567871-9568120 29 3.9
12_02_0077 - 13288916-13289659,13289689-13289691 28 6.8
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 28 6.8
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 6.8
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 27 9.0
08_02_0203 - 14231134-14231907 27 9.0
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984... 27 9.0
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185... 27 9.0
03_04_0006 + 16257288-16259522 27 9.0
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -3
Query: 273 QRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 103
QR S E+ Y TP + Y A SSS GSS P P+A++ + E R
Sbjct: 290 QRSSFEQKTNYQTPASALYGAYEGSSSQGSSSGYGEPPKDPVALMEFYMKKAAQEER 346
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 54 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 200
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>12_01_0843 + 7891622-7892524
Length = 300
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = -3
Query: 327 APLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPL 148
AP P V+ +T+ VV + ER L SP SSS+G + SP P P
Sbjct: 66 APAPAPSVAGKTVPKVVGDCKEMEREKEKEKSLSSP-----SSSSSGMTSVESSPPPPPS 120
Query: 147 AVVSL 133
A++ L
Sbjct: 121 AMLPL 125
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 497 RTLRYSLTDVPPQSNSPPGSV*TGSRGSFKRRRAFPPRH 381
R++R + + PP + PP + G +FK+R+ P H
Sbjct: 53 RSIRLAASCFPPPEHPPPAAGNAGRDAAFKKRQVMVPGH 91
>11_06_0556 -
24950873-24951078,24951174-24951378,24951458-24951588,
24951691-24951836,24952110-24952175,24953244-24953360,
24953974-24954063,24954568-24954707
Length = 366
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 497 RTLRYSLTDVPPQSNSPPGSV*TGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTA 327
R R+ L P ++ P GS+ ++ + R R ER +PP L TA
Sbjct: 62 RQSRHQLRGAQPSTSQKPRHAEAGSKTHVRQSVLYSERKRQPRHERGGTQPPTLLTA 118
>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
19799503-19799671,19799758-19799850
Length = 1330
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 532 LHARFCPRELALGHCVIL*QMYRPSQTPRLAVSEPDHAGVLNGDERFRHVTTLHAWNETP 353
LH CP L+ G C++ Q Y+ + L V L +E FR ++T+ +
Sbjct: 1002 LHVDSCPNLLSFGSCIVEEQHYKALTS--LKVIGCSMLEKLPSEEHFRRISTMESIEILQ 1059
Query: 352 C 350
C
Sbjct: 1060 C 1060
>08_01_0878 +
8624616-8624761,8625861-8626274,8626895-8626945,
8627179-8627215,8629535-8630059
Length = 390
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 527 REVLSSRAGLRTLRYSLTD---VPPQSNSPPGSV*TGSRGSFKRRRAFPP 387
RE+L R L + +TD VPP+ N+PP V +G +R+ P
Sbjct: 179 RELLERRRSLFEFKEVITDPFTVPPRPNTPPSRVCSGLEQRCRRQVGVVP 228
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 382 TTLHAWNETPCARRYY 335
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 327 APLPPNRVSNETMKV--VVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKPV 154
A L P R N V+ RR RE+S + R SSS+ S PA +P P
Sbjct: 127 ARLFPGRTDNAVKNHWHVLMARRHREQS--------GAFRRRKPSSSSASPAPAPAPPPP 178
Query: 153 PLAVVSL 133
P VV+L
Sbjct: 179 PQPVVAL 185
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 204 ESSSTGSSFPADSPKPVPLAVVSLDSR 124
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 318 PPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKP 157
PP S +T + F S + PT A+P+ P N R S P S P
Sbjct: 487 PPPWASEDTAESNPFIAASLKNQPTSASPVNVPLNLRPLQQSNSFGVPLRSAGP 540
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 234 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 127
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 220 RRHERCSISGRSFARSSLKNHYFHCFITYSVGRKRCAVDN 339
+RH C +SG F + + Y HC + K+ +N
Sbjct: 537 KRHLTCLLSGDKFLNDDVISAYIHCLSEQANNDKKVKYEN 576
>08_02_0203 - 14231134-14231907
Length = 257
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = -3
Query: 366 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG 187
G HR ADI P PP+ + E + + R S R A P + +A + SSS+G
Sbjct: 196 GGSHRVVADI----P-PPSGLLVEGPNHIRYYRGSCYRLVMQAPPPLDD-DAEMTSSSSG 249
Query: 186 SSFPADS 166
S P+DS
Sbjct: 250 SPGPSDS 256
>05_04_0086 -
17797792-17797810,17798049-17798234,17798319-17798407,
17798518-17798712,17799364-17799525,17799609-17799681,
17799929-17799996,17800086-17800133,17800223-17800288,
17800418-17800488,17800825-17800891
Length = 347
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 581 VPMRTEHLDQASFCHFAPREVLSSRAGLRTLRYSLTDVPPQSNSPP 444
+P + Q ++ HF PREV GL +L YS+ + S P
Sbjct: 232 LPPYYHYFPQKTYHHF-PREVWVHNVGLGSLVYSIEQICDDSGEDP 276
>04_04_0477 +
25517060-25517152,25517263-25517382,25518203-25518506,
25518944-25519305,25519401-25519575,25520510-25520574,
25520725-25520790,25521275-25521350,25521813-25521922
Length = 456
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 322 RCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVQTLPGGEFD 459
R + + GR + +R + RGG ARR P D + GG +D
Sbjct: 395 RASPIELNGRLIHVEERRQIYRGGGARRGRGRPADFSRGQSGGRYD 440
>03_04_0006 + 16257288-16259522
Length = 744
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -3
Query: 255 RSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 109
RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 164 RSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,714
Number of Sequences: 37544
Number of extensions: 425282
Number of successful extensions: 1393
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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