Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0345
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   1.2  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   1.2  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U20862-6|AAK95884.1|  100|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   3.5  
AF022973-8|AAC25801.1|  116|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = -3

Query: 426 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSP 247
           +T+E  T  S +A  P     TKHR    +++        ++ + +K    +     R+P
Sbjct: 581 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 636

Query: 246 TYATPLMSPYNARLESSST 190
               P+  P   + E+  T
Sbjct: 637 ESTVPIGPPVEVKAEAIQT 655


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = -3

Query: 426 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSP 247
           +T+E  T  S +A  P     TKHR    +++        ++ + +K    +     R+P
Sbjct: 577 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 632

Query: 246 TYATPLMSPYNARLESSST 190
               P+  P   + E+  T
Sbjct: 633 ESTVPIGPPVEVKAEAIQT 651


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = -3

Query: 408 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPL 229
           T+ +   TSP  T+GT   APA++      P N  S+ T         S   +PT   P+
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 681

Query: 228 MSPYNARLESSSTGSSFPADSPKPVPLAVV 139
            +       S++T ++    + +  P   V
Sbjct: 682 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = -3

Query: 408 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPL 229
           T+ +   TSP  T+GT   APA++      P N  S+ T         S   +PT   P+
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 737

Query: 228 MSPYNARLESSSTGSSFPADSPKPVPLAVV 139
            +       S++T ++    + +  P   V
Sbjct: 738 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = -3

Query: 366 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG 187
           G     P   I + PL       +T      +R+ +ER P Y  P   P   R+E     
Sbjct: 349 GEMTETPRRTITKTPLKTVNAKAKTSPTPPVERQKKERKPLYVAP---PAKERVEKEKKI 405

Query: 186 SSFPADSP 163
            S P  SP
Sbjct: 406 PSKPVVSP 413


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = -3

Query: 366 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLESSSTG 187
           G     P   I + PL       +T      +R+ +ER P Y  P   P   R+E     
Sbjct: 417 GEMTETPRRTITKTPLKTVNAKAKTSPTPPVERQKKERKPLYVAP---PAKERVEKEKKI 473

Query: 186 SSFPADSP 163
            S P  SP
Sbjct: 474 PSKPVVSP 481


>U20862-6|AAK95884.1|  100|Caenorhabditis elegans Hypothetical
           protein W06E11.7 protein.
          Length = 100

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -1

Query: 527 REVLSSRAGLRTLRYSLTDVPPQSNSPPGSV*TGSRGSFKRRRAFPPRHHSARLERNTVR 348
           R+ LSS  G   ++++L+  PP  N+P G   + S G         P HH A    NT  
Sbjct: 35  RDSLSSVNGEARVQFALSQTPPVENAPTGG--SSSMGQ-------SPPHHPANTSTNTAT 85

Query: 347 PPILS 333
              LS
Sbjct: 86  HHTLS 90


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 465 RYICQRITQCPKASSRGQNLAWSKM 539
           RYICQR ++  K   R  N  W K+
Sbjct: 180 RYICQRTSENHKQQQRSNNYIWQKI 204


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 405 ATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETM-KVVVFQRRSRERSPTYATPL 229
           AT+  AT+PL T     RAP       P PP R S   + +     R +  R PT  TP 
Sbjct: 318 ATTPLATTPLATT----RAPLP-----PSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPR 368

Query: 228 MSPYNARLESSSTGS 184
            +P   R   ++T +
Sbjct: 369 PTPRRTRRPKTTTAA 383


>AF022973-8|AAC25801.1|  116|Caenorhabditis elegans Hypothetical
           protein F25G6.8 protein.
          Length = 116

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 288 KVVVFQRRSRERSPTYATPLMSPYNARLESSSTGSSF 178
           K+  F R S+ R P      M PY+ R ++   GS+F
Sbjct: 16  KLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPKGSTF 52


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 467 PPQSNSPP-GSV*TGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 321
           PP+  SP  GS    +R S  RRR  PP     R +R   R P+     R
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,775
Number of Sequences: 27780
Number of extensions: 316804
Number of successful extensions: 944
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)