Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0345
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   7.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 483 ITQCPKASSRGQNLAWSKMAKAGLI 557
           +TQC + SS GQ++ +S M    L+
Sbjct: 21  LTQCLQESSTGQSVEFSPMELNALV 45


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 1    PAREQARVNGGSN-YDSLKV 57
            PARE   VNGG N  D +K+
Sbjct: 1561 PARELPDVNGGGNDEDPMKI 1580


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 265 SSLKNHYFHCFITYSVGRK 321
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 259 ARSSLKNHYFHCFI 300
           A   L+N Y+ CFI
Sbjct: 37  ANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 259 ARSSLKNHYFHCFI 300
           A   L+N Y+ CFI
Sbjct: 37  ANDRLRNQYYDCFI 50


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 240 ATPLMSPYNARLESSSTGSSFP 175
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 QRGKKTLLSLTLVWHCKE 224
           + G KTLLS T +W  ++
Sbjct: 231 KNGMKTLLSETDIWEVEQ 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,008
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)