Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0345
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 2.5
At5g27070.1 68418.m03230 MADS-box family protein contains Pfam p... 29 2.5
At3g62370.1 68416.m07006 expressed protein 28 4.3
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 28 5.7
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 7.5
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 7.5
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 27 7.5
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 7.5
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 7.5
At5g59350.1 68418.m07436 expressed protein predicted protein, Ar... 27 10.0
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 10.0
At1g15030.1 68414.m01796 expressed protein 27 10.0
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 240 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 130
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At5g27070.1 68418.m03230 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL53
Length = 287
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 399 SVSATSPLCTLGTKHRAPADIIDRAPLP-PNRVSNETMKVVVFQRRSRERSPTYATPLMS 223
SVS+ LG + D P+ P ++ +T V Q + ++P++A P+M
Sbjct: 225 SVSSFDQSALLGEQGSGLGSNFDLPPMVFPPQMQTQTPLVPFDQFAAWNQAPSFADPMMF 284
Query: 222 PYN 214
PYN
Sbjct: 285 PYN 287
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 448 RLAVSEPDHAGVLNGDERFRHVTTLHAWN 362
RL P G NG +RF H+ ++AWN
Sbjct: 165 RLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -3
Query: 408 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRERSP 247
TA + T+ T+G + PA I L P+R++ + + + + R + +P
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSMNIPAVRLLDSNP 71
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 252 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 145
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 372 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 277
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -3
Query: 345 ADIIDRAPLPPNRVSNETMKVVVFQRRSRERSPTYATPLMSPYNARLES 199
AD R+P S K + RR R RSPTY+ P P + R S
Sbjct: 503 ADQKSRSPSKSPARSRSKSKSPISYRR-RRRSPTYSPPFRRPRSHRSRS 550
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 273 QRRSRERSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 151
Q ++ +P P P + + ESS P +SPKP P
Sbjct: 487 QESPKQEAPKPEQPKPKPESPKQESSKQEPPKPEESPKPEP 527
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 54 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 185
G +P + +SD + INE+ P +AK +E + GK+
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
>At5g59350.1 68418.m07436 expressed protein predicted protein,
Arabidopsis thaliana
Length = 287
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 512 SRAGLRTLRYSLTDVPPQSNSPPGSV*TGSRGSFKRRRAFPPRHH 378
SR G R+ R SL+DVP N+P + + S ++P HH
Sbjct: 141 SRLGSRSRRRSLSDVPNDCNTPGFTPLASPKKSSSPLESYP--HH 183
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 261 RERSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 151
++ P P SP + R S GSS + SP P+P
Sbjct: 36 KQPPPQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 27.1 bits (57), Expect = 10.0
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +3
Query: 3 GTRASAGKRRE*L*LS*GSQMPRHLISDA-----HEWINEI-PTVPIYYLAKPQPRERAW 164
G R+S K RE GS + +H +S+A +++ + P+VP +YL+K RER
Sbjct: 21 GCRSSHTKDREN-----GSALLKHHVSEASSSNVERFLDSVTPSVPAHYLSKTIVRERGG 75
Query: 165 ENQRGKKTLLSLTLVW 212
+ + L VW
Sbjct: 76 SDVESQVPYFLLGDVW 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,532
Number of Sequences: 28952
Number of extensions: 311744
Number of successful extensions: 833
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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