Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0344
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   2.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   3.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.1  

>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 368 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFSQHLIVQ 237
           AG  T+  G  LG     T LGT++  + MIT    GF   + +Q
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMSMQ 243


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 196
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
 Frame = -1

Query: 522 RGHNGGSAXXXXXXXXXXXRALG*----GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 355
           RGHNGG                G     G  G   H HGGH G         G  GG   
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242

Query: 354 DHRGYTRSLG 325
              G+   LG
Sbjct: 243 GPGGFGGGLG 252


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 86  PDVGPALVEAPIVPSPVHVGPLVP 157
           P V P + EAP VP P  V P+ P
Sbjct: 592 PPVAPVVPEAPSVPQP-PVAPVAP 614



 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 86  PDVGPALVEAPIVPSPVHVGPLVP 157
           P V P   E P VP P  V P+VP
Sbjct: 577 PPVAPVAPEVPSVPQP-PVAPVVP 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,032
Number of Sequences: 5004
Number of extensions: 30395
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)