Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0344
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0141 - 937428-937717,938483-938705 32 0.32
06_03_0339 - 19687749-19690805 31 0.98
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214... 30 1.3
12_02_0306 + 17307166-17309091 29 2.3
03_03_0172 - 15082426-15082616,15084243-15084741 29 4.0
12_02_0299 - 17051570-17052474,17053542-17053755 28 5.2
01_01_0387 + 2999222-2999495,2999834-2999934 28 5.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.9
02_05_1332 + 35758657-35758728,35758959-35760689 28 6.9
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 9.2
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 27 9.2
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/87 (27%), Positives = 34/87 (39%)
Frame = -1
Query: 516 HNGGSAXXXXXXXXXXXRALG*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 337
H GG+ A G H ++SH HG H G+ GH+GG+ H G+
Sbjct: 77 HGGGNMGMLAAGAAAAAAAYG-AH--KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHH 127
Query: 336 RSLGNNYRARYYDGRISNDHGRNSRLF 256
L + + G HG + LF
Sbjct: 128 GGLFGGHHGHHGGGLFGGHHGHHGGLF 154
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -1
Query: 435 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLF 256
V + G H HV A G+ G + R + ++ GN+ +A ++ R +F
Sbjct: 262 VHANFGSHNAHVETKRGADGNEAGGLKNKRKFAKATGNSSKA----SSVAGSKKRRKAMF 317
Query: 255 STFDCSGSTLST 220
+ + S S ST
Sbjct: 318 ESSESSASDTST 329
>10_08_0603 -
19120434-19120538,19121209-19121310,19121430-19121462,
19122049-19122216,19122311-19122373,19122514-19122624,
19122926-19123035,19123150-19123446,19123632-19123710,
19123811-19123919,19124000-19124041,19124743-19124873,
19126150-19126797
Length = 665
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 490 GDTMDTSPTSTGLGAQWQGQPRPRGTP---GTRHQRALG*GPQWRGQPRSQGL 341
G+ ++ G G + G+P P GTP G R+ G W G P +G+
Sbjct: 36 GEEVEVGRGGGGGGGRRSGRPSPAGTPRRRGATPARSSVAGSPWAGSPLPEGI 88
>12_02_0306 + 17307166-17309091
Length = 641
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 285
G+G T+ G GA +G S T G GT+ G A
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDA 506
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 285
G+G T+ G GA +G S T G GT+ G A
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 239
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 285
G+G T+ G GA +G S T G GT+ G A
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 390
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 285
G+G T+ G GA +G S T G GT+ G A
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 285
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
>03_03_0172 - 15082426-15082616,15084243-15084741
Length = 229
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 502 SHDHGDTMDTSPTSTGLGAQWQGQPRPRGTPG 407
S D G + T+P +T G ++Q RP+ TPG
Sbjct: 43 SEDVGSSTWTAPMATSRGVRFQLSLRPKETPG 74
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 5.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 410 WCPPWSWLTLPLC 448
+CPPW W +P C
Sbjct: 208 YCPPWPWPPIPFC 220
>01_01_0387 + 2999222-2999495,2999834-2999934
Length = 124
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 459 LG*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 319
+G GH+ +GG +G V+ + GH GG H GY + G +
Sbjct: 1 MGGGHDMHGGGQNGGVKGLVSKLVGGGGHGGGHGGGH-GYEQGYGGH 46
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -1
Query: 456 G*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARY 304
G H H HGGH + H G HD + ++ G N+ Y
Sbjct: 547 GHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGRNHHRGY 597
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -1
Query: 423 HGGHQGHVTNVHWARGHNGGVSHDHRG-YTRS-LGNNYRARYYDGRISNDHGRNSRLFST 250
H G N+ GH+ G+ HD +G Y S + NYR G ++G F
Sbjct: 141 HNGKTAQKQNLTNRAGHSSGIIHDKKGSYMPSGVTKNYRPPPSTGDDLAENGVEMGEFVR 200
Query: 249 FDCSGSTLSTGVA 211
GS + TG A
Sbjct: 201 EPSPGSDVLTGGA 213
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 450 GHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDHRGYTRS 331
GH ++S D HQ H N H +G NG HD + + ++
Sbjct: 647 GHR-QMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQN 686
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 515 TMGGQPRPRGHDGHVTDEH 459
T GG P P H G VTD H
Sbjct: 137 THGGSPHPHSHLGGVTDGH 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,389
Number of Sequences: 37544
Number of extensions: 276134
Number of successful extensions: 1066
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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