Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0344
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.33
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 31 0.76
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 31 1.0
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 30 1.3
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 30 1.8
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 29 2.3
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96) 29 2.3
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9) 29 3.1
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39689| Best HMM Match : S-antigen (HMM E-Value=0.021) 29 4.1
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 5.4
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.4
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 28 5.4
SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 7.1
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 27 9.4
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 423 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 313
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = -1
Query: 456 G*GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGR 292
G GH+ SH++ GH GH H N G SH H G++ + G+++ +
Sbjct: 308 GHGHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHG 367
Query: 291 ISNDHGRNSRLFSTFDCSGSTL 226
S++H L+ D +L
Sbjct: 368 HSHEHEPKQDLYHHEDFDSYSL 389
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 110 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVE 256
+ PI P P + + G L +++++ND +A PVE+V+ +Q++ +
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADAD 395
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFSQH 249
G+G +++G + G L A + G+G + AG+ +++ G T S+H
Sbjct: 78 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTTKVSKH 124
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 508 GVSHDHGDTMDTSPTSTGLGAQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQG 344
GV+ + GD P +G + GQP P G+PG +R G P +G+ + G
Sbjct: 12 GVTGEQGDAGPPGPEGN-MGPR--GQPGPEGSPGLPGERGTGGVPGPKGKQGAPG 63
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 508 GVSHDHGDTMDTSPTSTGLGAQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQG 344
GV+ + GD P +G + GQP P G+PG +R G P +G+ + G
Sbjct: 12 GVTGEQGDAGPPGPEGN-MGPR--GQPGPEGSPGLPGERGTGGVPGPKGKQGAPG 63
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Frame = -1
Query: 519 GHNGGSAXXXXXXXXXXXRALG*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 340
G+ GG G GH G + GGH+G + + +GG GY
Sbjct: 758 GYRGGGGYGGGGGGYRGGGGYGGGHRGGGGYGGGGHRGGSYSGYRGSYKSGGYGQGSGGY 817
Query: 339 TRSLGNNYRARYYD--GRISNDHGR 271
+ G R Y+ G N + R
Sbjct: 818 GQGSGGYNRNTGYNTYGSYGNQNQR 842
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFSQH 249
G+G +++G + G L A + G+G + AG+ +++ G T+ ++H
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGFTSKVAKH 248
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = -1
Query: 444 NGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 277
+G DHGG H G + R +GG DH G R G R GR DH
Sbjct: 6 HGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR---DH 62
Query: 276 GRNSR 262
G R
Sbjct: 63 GGTGR 67
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = -1
Query: 444 NGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRISNDH 277
+G DHGG + G H G + GG DH G R G R GR DH
Sbjct: 13 HGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR---DH 69
Query: 276 GRNSR 262
G R
Sbjct: 70 GGTGR 74
>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
Length = 209
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFSQH 249
G+G +++G + G L A + G+G + AG+ +++ G T+ ++H
Sbjct: 94 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVSRGLTSKVAKH 140
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.1 bits (62), Expect = 3.1
Identities = 26/60 (43%), Positives = 29/60 (48%)
Frame = -3
Query: 520 GPQWGVSHDHGDTMDTSPTSTGLGAQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGL 341
GP GV+ + G DT P+ A G P P GTPGT Q A G P G P QGL
Sbjct: 849 GPP-GVTGEQGVKGDTGPSGEPGPA---GPPGPLGTPGT--QGAKG-EPGPLGTPGRQGL 901
>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
Length = 227
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFSQH 249
G+G +++G + G L A + G+G + AG+ +++ G T+ ++H
Sbjct: 67 GVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTSKVAKH 113
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = -1
Query: 444 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNS 265
+G SHD G H + + GH+G SHD G+ N G I D +
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGFYNVYYNGDPKSSVTGHIRPDGTFDG 64
Query: 264 RLFS 253
FS
Sbjct: 65 SFFS 68
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 429 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFST 250
HD G H + + +G SH H G G + YY+G + + R T
Sbjct: 2 HDDDGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGFYNVYYNGDPKSSVTGHIRPDGT 61
Query: 249 FDCSGSTLSTG 217
FD GS S G
Sbjct: 62 FD--GSFFSAG 70
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = -1
Query: 432 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFS 253
S H H+G VTN ++ DHRG RS ++Y + + R ++ HG R S
Sbjct: 831 SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS--DSY-PKAQNNR-NSTHGGKGRFAS 886
Query: 252 TFDCSGSTLSTGVALAASLM 193
+ LS+ V+ +S++
Sbjct: 887 AKAKTSVKLSSVVSKVSSVI 906
>SB_39689| Best HMM Match : S-antigen (HMM E-Value=0.021)
Length = 465
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/59 (35%), Positives = 24/59 (40%)
Frame = -3
Query: 496 DHGDTMDTSPTSTGLGAQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGLH*VPRQQ 320
+HG T + G Q PR +GT G R Q G Q PR QG PR Q
Sbjct: 259 NHGTTGPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTK-GPRDQ 316
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 444 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 334
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -1
Query: 456 G*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 277
G H+ R H HGG G+ + GH GG H H G G+ + DG H
Sbjct: 122 GRSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGH 178
Query: 276 G 274
G
Sbjct: 179 G 179
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 429 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 262
H HGG + T+ H + H+ H HR + + + GR ++DH R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 164 LTPLVHILININDAASATPVESVEPEQSNVEK 259
LT H+LIN+ND PV S QS V++
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -1
Query: 375 HNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFSTFDCSGSTLSTGVALAAS 199
H+G V HD T G AR+Y+ ++ HGR +L+ T G L V A++
Sbjct: 120 HHGTVRHDTVKNTEHHGT---ARHYNDNGTSWHGRRRQLYLTCIQQGKILGFEVGAAST 175
>SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -2
Query: 386 GLGATMAGSATITGATLGPSATITGL-GTMMAGSAMIT-GETAGFSQH 249
GLG +++G +TGA P A + GL G + AG+ +++ G T+ ++H
Sbjct: 250 GLGVSLSGIGVLTGA---PLAGVAGLVGVVGAGARVVSRGLTSKVAKH 294
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 429 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 337
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -3
Query: 520 GPQWGVSHDHGDTMDTSPTSTGLGAQWQ-GQPRPRGTPGTRHQRALG*GPQWRGQPRSQG 344
GP G + G P G + G P PRG+PG R GP RGQ G
Sbjct: 61 GPPGGSTQTAGGIKGPDPNDLAAGIKGSNGAPGPRGSPGLPGPRGSD-GP--RGQRGEVG 117
Query: 343 L 341
L
Sbjct: 118 L 118
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 174 RGVSCPGTRGPTWTGDGTMGA 112
R +CP TRG T +G G GA
Sbjct: 449 RSSACPPTRGSTSSGSGAFGA 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,544
Number of Sequences: 59808
Number of extensions: 292531
Number of successful extensions: 1101
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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