Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0344
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.050
At3g63100.1 68416.m07087 glycine-rich protein                          31   0.62 
At2g05440.2 68415.m00575 glycine-rich protein                          31   0.62 
At2g05440.1 68415.m00574 glycine-rich protein                          31   0.62 
At1g27090.1 68414.m03302 glycine-rich protein                          29   1.9  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    28   4.4  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -1

Query: 447 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 316
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -1

Query: 456 G*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 316
           G GH G   H HGGH G     H   G+ GG    H G+    G +Y
Sbjct: 52  GGGHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -1

Query: 456 G*GHNGRVSHDHG-GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 316
           G GH     H HG GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 91  GHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 429 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 262
           HD+G    H  + H   GH  G  H   G+ R  G+     +  G     HGR+ R
Sbjct: 62  HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 450 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 319
           G + R   D G H+GH    H  RGH  G    H G+ R  G +
Sbjct: 110 GRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/62 (29%), Positives = 23/62 (37%)
 Frame = -1

Query: 447 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 268
           H     H H  H GH       RGH  G  H HR + R   +     ++ G   + H R 
Sbjct: 75  HGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GHHHHRG 132

Query: 267 SR 262
            R
Sbjct: 133 HR 134


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = -1

Query: 456 G*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 340
           G GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 44  GGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75



 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 450 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 355
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = -1

Query: 456 G*GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 340
           G GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 44  GGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75



 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 450 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 355
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 441 GRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 292
           GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 344 GRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 74  HYESPDVGPALVEAPIVPSPVHVGPLVP 157
           HY SP   P    +P  PSP   GPL P
Sbjct: 452 HYSSPPPPPVHHSSPPPPSPEFEGPLPP 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,988
Number of Sequences: 28952
Number of extensions: 185812
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)