Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0343
(536 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.26
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 30 1.4
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 1.8
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 5.6
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 27 7.3
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 27 7.3
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 27 7.3
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96) 27 7.3
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_58446| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 27 9.7
SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10) 27 9.7
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 27 9.7
SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9) 27 9.7
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 27 9.7
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 159 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 49
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -3
Query: 204 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 25
D+ R H+ R H HGG G+ + GH GG H H G G+ + DG
Sbjct: 118 DDCDGRSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGP 174
Query: 24 SNDHG 10
HG
Sbjct: 175 GPGHG 179
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3
Query: 192 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 25
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60
Query: 24 SNDHG 10
DHG
Sbjct: 61 --DHG 63
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Frame = -3
Query: 204 DEHWARGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYY 37
D R +G DHGG + G H G + GG DH G R G R
Sbjct: 5 DHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGG 64
Query: 36 DGRISNDHG 10
GR DHG
Sbjct: 65 TGR---DHG 70
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -3
Query: 189 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 22
R H G DHGG H G + R +GG DH G R G R G
Sbjct: 60 RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115
Query: 21 NDHG 10
DHG
Sbjct: 116 RDHG 119
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -3
Query: 189 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 10
R H+G DHGG + + R +GG DH G R G R +DG DHG
Sbjct: 81 RDHDG-TRRDHGGTR---RDHGGTRRDHGGTRRDHGGTRRDHGGT--RRDHDG-TGRDHG 133
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -3
Query: 186 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 22
GH+ SH++ GH GH H N G SH H G++ + G+++ + S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
Query: 21 NDH 13
++H
Sbjct: 370 HEH 372
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 159 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 4
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 204 DEHWARGHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDH 85
+ H N SH H GH + + H GH+ G SH+H
Sbjct: 332 ENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHSHEH 372
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 191 AQCSSVTCPSCPPWSWLTPPLCP*P 265
AQCS+ +CPP+S L P CP P
Sbjct: 718 AQCSN-PMSACPPFSLLRPHKCPDP 741
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 192 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 52
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 180 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 70
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 165 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 73
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 180 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 76
+G SHD G H + + GH+G SHD G+
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 189 RGHNGRVSHDHGGHQGHVTNVHWA 118
+G N + + GH HVTNV WA
Sbjct: 875 KGKNAKFKK-YPGHSAHVTNVRWA 897
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 122 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 12
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVS 238
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 122 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 12
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 78 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVS 114
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = -3
Query: 195 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 79
W RG G + GG G + W R GG+ G
Sbjct: 24 WGRGQGGGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGG 62
>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
Length = 209
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 122 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 12
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 94 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVS 130
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 168 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 67
S H H+G VTN ++ DHRG RS
Sbjct: 831 SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS 864
>SB_58446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 183 HNGRVSHDHGGHQGHVTNVH-WARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 13
H+G++ H H G + H W H+G + H + + + A ++DG+I H
Sbjct: 97 HDGKIQGFHAWHNGKIQGFHTW---HDGKIQGFHAWHDGKI-QGFHA-WHDGKIQGFH 149
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 153 GHQGHVTNVHWARGH 109
GH+G V +HW +GH
Sbjct: 1128 GHKGQVHPIHWHKGH 1142
>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
Length = 142
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 135 TNVHWARGHNGGVSHDHRGYTRSLGNNY 52
T V WA H G ++H H G + G Y
Sbjct: 107 TQVGWALMHPGRLTHYHEGLPTTWGTRY 134
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -3
Query: 192 ARGHNGRVSHDHGG---HQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDG 31
+RG+ G + +GG H G T + H GG + + G+TR G+ R+Y G
Sbjct: 328 SRGNTGGFTRHYGGFTRHYGGFTRHYGVFTRHYGGFTRHYGGFTRHYGD--FTRHYGG 383
>SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 192 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR 70
+RG+ G GG +G+ G G++ RGYTR
Sbjct: 17 SRGYTGGTRGYTGGTRGYTGGTRGYTGGTRGLTRGTRGYTR 57
>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
Length = 227
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 122 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 12
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 67 GVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVS 103
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = -3
Query: 192 ARGHNGRVSHDHGGHQGHVTNVH---WARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 22
A GH ++ GH+ N H A GH ++ H T + N A ++ +
Sbjct: 19 ANGHENMTAN---GHENMTANSHENMTANGHENMTANGHENMTANGHENMTANGHENMTA 75
Query: 21 NDH 13
N H
Sbjct: 76 NSH 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,228,276
Number of Sequences: 59808
Number of extensions: 167115
Number of successful extensions: 636
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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