Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0343
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.040
At2g05440.2 68415.m00575 glycine-rich protein                          31   0.37 
At2g05440.1 68415.m00574 glycine-rich protein                          31   0.37 
At3g63100.1 68416.m07087 glycine-rich protein                          31   0.64 
At1g27090.1 68414.m03302 glycine-rich protein                          30   1.1  
At5g05190.1 68418.m00553 expressed protein similar to unknown pr...    28   3.4  
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    27   6.0  
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    27   6.0  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.040
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 183 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 52
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 198 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 52
           H   GH G   H HGGH G     H   G+ GG    H G+    G +Y
Sbjct: 50  HGGGGHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -3

Query: 201 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 76
           E +  GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 41  EGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 186 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 91
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -3

Query: 201 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 76
           E +  GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 41  EGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 186 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 91
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = -3

Query: 189 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 52
           RGH     H HG   GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 90  RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 198 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 55
           H   G + R   D G H+GH    H  RGH  G    H G+ R  G +
Sbjct: 106 HRRHGRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = -3

Query: 198 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR 70
           H    H     H H  H GH       RGH  G  H HR + R
Sbjct: 70  HCDHCHGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGR 111



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -3

Query: 165 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 4
           HD+G    H  + H   GH  G  H   G+ R  G+     +  G     HGR+
Sbjct: 62  HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRD 112


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 189 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 28
           +   GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At5g05190.1 68418.m00553 expressed protein similar to unknown
           protein (emb|CAB88044.1)
          Length = 615

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -3

Query: 201 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 22
           E + RG     SHD         ++     + GG++HD   Y        R +    RIS
Sbjct: 354 ESYTRGSPSHPSHDEFDRYPRAHSLQMP-SYAGGMNHDFVDYMYHNNPRARGQGQGSRIS 412

Query: 21  NDHGRN 4
            + GRN
Sbjct: 413 GEMGRN 418


>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = -3

Query: 204 DEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 85
           D   + GH     HDH  H   VT    H    H  G SH H
Sbjct: 183 DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = -3

Query: 204 DEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 85
           D   + GH     HDH  H   VT    H    H  G SH H
Sbjct: 183 DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,973,033
Number of Sequences: 28952
Number of extensions: 108007
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)