Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0341
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    24   1.4  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    24   1.4  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.3  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 675 KQGGYERQVISWRCETSVNP 616
           K  G+ R V++W+  T V+P
Sbjct: 721 KADGFPRPVVTWKRATGVSP 740


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 434 MCTNMLFAFAGRSED 478
           +CT++L+AF G  ED
Sbjct: 50  LCTHILYAFVGLRED 64


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 434 MCTNMLFAFAGRSED 478
           +CT++L+AF G  ED
Sbjct: 50  LCTHILYAFVGLRED 64


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 434 MCTNMLFAFAGRSED 478
           +CT++L+AF G  +D
Sbjct: 49  LCTHLLYAFVGLRDD 63


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 543 LSNSNACRCMSYFTGNIVALCMSSLRPAKANN 448
           L NS +C C S   G I  + +   RP   +N
Sbjct: 240 LVNSFSCSCPSGTLGYICEINVDDCRPGACHN 271


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +2

Query: 434 MCTNMLFAFAGRSED 478
           +CT+++++F G  +D
Sbjct: 48  LCTHLIYSFVGLGDD 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,731
Number of Sequences: 336
Number of extensions: 3858
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)