Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0341
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 82 9e-17
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 79 8e-16
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 58 1e-09
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 28 1.6
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 28 1.6
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 27 3.6
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 27 3.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 8.3
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 81.8 bits (193), Expect = 9e-17
Identities = 40/87 (45%), Positives = 53/87 (60%)
Frame = +3
Query: 3 LGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQ 182
LGN RG YSR H++ D D EFW FS ++ D+P IDY LK +G+ +L YIG SQ
Sbjct: 165 LGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFAQYDIPDTIDYILKTSGQTKLTYIGFSQ 223
Query: 183 GTTVFWAMGSLRPEYNSKIIAMQAMLP 263
GT +A S+ P N KI ++ A+ P
Sbjct: 224 GTAQAFASLSIHPLLNDKINSLIALAP 250
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 78.6 bits (185), Expect = 8e-16
Identities = 37/87 (42%), Positives = 50/87 (57%)
Frame = +3
Query: 3 LGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQ 182
LGN RG YSR HI P D EFW FS +++ D+P +DY L+ G+ +L+YIG SQ
Sbjct: 153 LGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDIPDTVDYILRETGREKLNYIGFSQ 211
Query: 183 GTTVFWAMGSLRPEYNSKIIAMQAMLP 263
GT A S+ P+ N K+ + P
Sbjct: 212 GTAQAMAALSINPDLNDKVNIFIGLAP 238
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/112 (30%), Positives = 55/112 (49%)
Frame = +3
Query: 3 LGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQ 182
LGN RG YS +IK N +FW FS + I D+P+++ Y L V + +G SQ
Sbjct: 157 LGNLRGNKYSIKNIKFSSQNP-KFWDFSLDSIAIFDIPSIVKYILSVNSFDSISLVGFSQ 215
Query: 183 GTTVFWAMGSLRPEYNSKIIAMQAMLP*LT*NLMQTDYLNSLLHMPTVLRHL 338
G + +A S+ E + + A A+ P + + S++H + L +L
Sbjct: 216 GAILAFAALSIDTELRNSVRAFIALAPAIAPKKYSGRTVKSIIHANSQLLYL 267
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 251 SYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNLGMR 403
SY P + N N+ ++N EA S GI+ +FG++DF LG++
Sbjct: 37 SYKPAPRIRINNNKTKAQTTTNSN--EARQS--GISAMFGQNDFSNLLGLK 83
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 150 KRRLHYIGHSQGTTVFWAMGSLRPEYNSKI 239
K R+ IGHS G+TV + + SL+P + +I
Sbjct: 391 KGRIFIIGHSLGSTVVFDILSLQPTFVKEI 420
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 350 GINELFGRSDFFTNLGMRFCADGTFFQAMCTNML 451
GI+E F S NLGM FCA +++ N L
Sbjct: 244 GIHEEFVFSPRLDNLGMTFCASQALTKSLENNSL 277
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 507 FTGNIVALCMSSLRPAKANNIFVHIAWKNV 418
F N+V C S R A++I + +KN+
Sbjct: 125 FEDNVVVYCRSGRRSTTASDILTKLGYKNI 154
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 522 RCMSYFTGNIVALCMSSLRPAKANNIFVHIAWKNVPSAQNLIPK 391
R +SY N++ LC S PA NN + K P Q+ P+
Sbjct: 81 RPLSYPNSNVILLCFSIDCPASLNN----VTEKWYPEVQHFCPR 120
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 465 PAKANNIFVHIAWKNVPSAQNLIPKLVKKSDLPNSSFIPIRLVSASILLACGAMS 301
P N + +W + SA L P L SD P S +P +++ S L C A++
Sbjct: 281 PFSPINPYYAKSWNHTASAPLLPPGLKNGSDYPYLS-VPPDILNDSYLAMCEAVN 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,235
Number of Sequences: 5004
Number of extensions: 65529
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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