Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0341
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 67 2e-11
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 55 7e-08
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 48 8e-06
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 46 4e-05
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 38 0.011
07_01_1124 + 10392909-10392974,10393037-10393455,10393503-103936... 29 3.8
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 28 6.6
08_01_0397 - 3509186-3510291,3510322-3512335 28 8.7
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 28 8.7
07_03_0758 - 21292205-21293329 28 8.7
06_02_0329 - 14483954-14483984,14490155-14490843 28 8.7
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827... 28 8.7
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +3
Query: 3 LGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQ 182
+ N RGT +S H+ LDP + S +W +SW++I D+PA++DY G++ HY+GHS
Sbjct: 133 IANNRGTRWSSRHVSLDPKSRS-YWNWSWDDIVVNDMPAIVDYVCSHTGQKP-HYVGHSM 190
Query: 183 GTTV 194
GT V
Sbjct: 191 GTLV 194
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 54.8 bits (126), Expect = 7e-08
Identities = 17/41 (41%), Positives = 31/41 (75%)
Frame = +3
Query: 72 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTV 194
+W +SW+E+ ++DL A++ Y AG++++HY+GHS GT +
Sbjct: 200 YWNWSWDELSSKDLSAVVQYVYSQAGQQKMHYVGHSLGTLI 240
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 508 IGHTPAGIAVRQIAHYGQLINKNFFRRYDHGRL-TNWRVYRSFTPPRYDLSLITALF 675
+ H P A + + H Q+I +YD+G N Y TPP YD++ I F
Sbjct: 340 LAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAGDNREHYGQATPPAYDVTAIPGDF 396
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 48.0 bits (109), Expect = 8e-06
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +3
Query: 72 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTVFWA 203
+W++SW+E+ + DLPA++ + G+ ++HYIGHS GT + A
Sbjct: 129 YWEWSWDELASYDLPAVLQFAYDHTGE-KIHYIGHSLGTLMILA 171
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/93 (30%), Positives = 48/93 (51%)
Frame = +3
Query: 72 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQ 251
FW +SW+E+ DL AM+ Y V + ++ Y+GHSQGT + A ++ PE I +
Sbjct: 209 FWDWSWQELAEYDLLAMLGYVYTVT-QSKILYVGHSQGTIMGLAALTM-PEIVKMISSAA 266
Query: 252 AMLP*LT*NLMQTDYLNSLLHMPTVLRHLQVLL 350
+ P + D++++ + V HL +L
Sbjct: 267 LLCP-----ISYLDHVSASFVLRAVAMHLDQML 294
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 562 LINKNFFRRYDHGRLTNWRVYRSFTPPRYDLSLI 663
+I K F +YD+G L N R Y PP +DLS I
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSI 382
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +3
Query: 3 LGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKV----AGKRRLH 164
LGN RG SR H+ + + ++WK+S E GT+D+PA+++ K+ GK R H
Sbjct: 131 LGNLRGLV-SREHVDKNISS-YKYWKYSVNEHGTKDMPAIVEEIHKIKTSELGKSRPH 186
>07_01_1124 +
10392909-10392974,10393037-10393455,10393503-10393657,
10393792-10394247,10394379-10395298
Length = 671
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 482 ACLHCVRQKRITYL--CTSPGKMCHQR 408
AC+HC+ + TYL C MCH+R
Sbjct: 282 ACIHCMDETESTYLKHCRKVVYMCHRR 308
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 18 GTYYSRA-HIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTV 194
GTY+ H DND EF ++ E+G +P + Y GK + + T+
Sbjct: 382 GTYFVMVDHTPFGFDNDIEFCEYLIREVGVVAIPPSVFYLNPEDGKNLVRFTFCKDDETL 441
Query: 195 FWAMGSLRPEYNSK 236
A+ ++ + K
Sbjct: 442 RAAVERMKTKLRKK 455
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 470 CVRQKRITYLCTSPGKMCHQRRISF 396
C + I LCTS GK+ + RR++F
Sbjct: 553 CTPGRMIDILCTSSGKITNLRRVTF 577
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 470 CVRQKRITYLCTSPGKMCHQRRISF 396
C + I LCTS GK+ + RR++F
Sbjct: 414 CTPGRMIDILCTSSGKITNLRRVTF 438
>07_03_0758 - 21292205-21293329
Length = 374
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 668 PCFLHYVDEDIFADVRDVR 724
PC L Y D+DI A+V D R
Sbjct: 128 PCILRYSDQDILANVTDNR 146
>06_02_0329 - 14483954-14483984,14490155-14490843
Length = 239
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 3 LGNARGT-YYSRAHIKL-DPDNDSEFWKFSWEEIGTRDLP 116
LG A T + R HI++ D DN +W +W+ D P
Sbjct: 198 LGRAVATGIFERIHIRIYDDDNCEAYWHLAWDNNYFDDFP 237
>02_04_0561 +
23879976-23879981,23880531-23882558,23882687-23882722,
23882826-23882939,23883158-23883226,23883311-23883445
Length = 795
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 390 LVKKSDLPNSSFIPIRLVSASILLACGAMS 301
+V K D+P ++FI + S+LL CG +S
Sbjct: 242 VVGKYDMPLATFIGVNHHGQSVLLGCGLLS 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,313
Number of Sequences: 37544
Number of extensions: 406740
Number of successful extensions: 1056
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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