Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0340
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.38
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.7
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.7
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 27 3.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.7
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 4.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 6.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 8.2
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.38
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = -1
Query: 610 TSNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAPPLLMSQTKKLPRNCPTLGTPLTAV- 434
TS PV S +++ T + + V STP+ + T + P TPLT
Sbjct: 436 TSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTN 495
Query: 433 LYRPLARPRQSTTITLQSETASKA 362
+ P ST +T + T S +
Sbjct: 496 CTTSTSVPYTSTPVTSSNYTISSS 519
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -1
Query: 610 TSNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAPPLLMSQTKKLPRNCPTLGTPLT 440
TS P G ++SLS+ +T V + ++ S PI PP S T PT T T
Sbjct: 233 TSIPTGGSSSLSTPITPTVPPTSTSS--TSIPI-PPTSTSSTDTNSSPLPTTSTSCT 286
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -1
Query: 577 SSSVTDNVRAQAEANQVDSTPIAPPLLMSQTKKLPRNCPTLGTPL-TAVLYRPLARPRQS 401
S+ VT + + + V STP+ + T L + P TPL T + P S
Sbjct: 506 STPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTS 565
Query: 400 TTITLQSETASKA 362
T +T + T S +
Sbjct: 566 TPVTSSNYTISSS 578
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -1
Query: 610 TSNPVGSATSLSSS-VTDNVRAQAEANQVDSTPIAPPLLMSQTKKLPRNCPTLGTPLTAV 434
T P S+T L+++ T + + V STP+A + T + P TPLT
Sbjct: 412 TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTT 471
Query: 433 -LYRPLARPRQSTTIT 389
+ P ST +T
Sbjct: 472 NCTTSTSIPYTSTPVT 487
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 639 TTPPGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLP 508
+ PP P+ + P+ LPP +PA P P + P +P
Sbjct: 156 SAPPIPSKAPPIPS-SLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 591 LPPACRPALPTTCAPKLKPIKWTRPQLP 508
L P+ P LP + +L P+ TRPQ+P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIP 1072
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 170 LCQGTVQTTNTGFSPDVTKTTIKLLQMASQLY 265
LC +VQ+ +T PD+T + + +L ++ + Y
Sbjct: 248 LCSNSVQSAHTNLQPDIT-SFVAILSLSHEAY 278
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 70 SHYVEGVSRYVWMPDGEGVPHLVDLEETAEEDILMSR 180
S Y +G+S V + G+GV H+V + E+ + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 106 SKRIGLHLPHSDCCLQGSW 50
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 237 SYYKWQVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRP 362
S+ +Q NS+ N+N PL + GW S+ +S+ ++++ P
Sbjct: 12 SFPNYQENSL-NTNEEQTNPLESLRDGWASSNSSSSSSLLLP 52
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 412 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEGQLGSS 525
VLPT T S VS SSL++F ST GS+
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGST 281
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 622 SRIQTSNPVGSATSLSSSVTDNVRAQAEA 536
S QTSNP+ +AT+ +S +T+ ++
Sbjct: 810 SGTQTSNPINNATANTSGMTEKAAGHRDS 838
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -2
Query: 690 CGLPPHKLCVTVQGLVVTTPPGPAGSKPVTLLGLP 586
C P L VTV TT G GS TL G P
Sbjct: 188 CPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGTP 222
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 633 PPGPAGSKPVTLLGLPPACRPALPTTCAPKLKPI 532
PP + S+ V+ PPA PA+P AP L P+
Sbjct: 376 PPPLSSSRAVSN---PPAPPPAIPGRSAPALPPL 406
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 258 NSIRNSNYNGNLPLFVIVHGWNSNGN 335
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,995
Number of Sequences: 5004
Number of extensions: 72198
Number of successful extensions: 269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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