Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0340
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.10 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 463 PTLGTPLTAVLYRPLARPRQST 398
           P +GTP T ++Y+P   P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 413  TTPVHNNNVAVGDGQQGGAD 354
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 535  NQVDSTPIAPPLLMSQTKKLP 473
            NQV S P++ PLL    + +P
Sbjct: 1091 NQVGSGPLSEPLLTQTMEDVP 1111


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 413  TTPVHNNNVAVGDGQQGGAD 354
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 535  NQVDSTPIAPPLLMSQTKKLP 473
            NQV S P++ PLL    + +P
Sbjct: 1087 NQVGSGPLSEPLLTQTMEDVP 1107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 180 ERCKQPILAFHQT*PKQPSSYYKWQVNSIRNSNYN 284
           E  KQ +       P   S  +KW   SI N+N N
Sbjct: 106 EAKKQNLKVILDLVPNHTSDQHKWFQMSINNTNNN 140



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 12 GWLNSIVFWQCYP 50
          GW  + +F+Q YP
Sbjct: 23 GWWKNAIFYQVYP 35


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 681 PPHKLCVTVQGLV 643
           P H+LCV V G+V
Sbjct: 173 PRHRLCVFVAGVV 185


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 243 YKWQVNSIRNSNYNGN 290
           Y +  N+  N+NYN N
Sbjct: 331 YNYNNNNYNNNNYNNN 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,270
Number of Sequences: 438
Number of extensions: 5895
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)