Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0340
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37925.1 68415.m04655 copper transporter family protein simil... 31 1.0
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 30 1.3
At5g45500.1 68418.m05589 expressed protein weak similarity to re... 30 1.8
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 30 1.8
At5g13950.1 68418.m01631 expressed protein 29 2.3
At3g30490.1 68416.m03858 hypothetical protein 29 2.3
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 29 3.1
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 29 3.1
At2g40630.1 68415.m05011 expressed protein 29 4.1
At1g26110.1 68414.m03186 expressed protein 29 4.1
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 29 4.1
At5g62660.1 68418.m07864 F-box family protein contains Pfam prof... 28 5.4
At1g59940.1 68414.m06752 two-component responsive regulator / re... 28 5.4
At5g47240.1 68418.m05825 MutT/nudix family protein similar to SP... 28 7.1
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c... 28 7.1
At2g24910.1 68415.m02978 hypothetical protein 28 7.1
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 28 7.1
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 28 7.1
At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative (CH... 27 9.4
At3g55160.1 68416.m06126 expressed protein 27 9.4
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 27 9.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 27 9.4
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 27 9.4
At1g61080.1 68414.m06877 proline-rich family protein 27 9.4
At1g32810.1 68414.m04044 expressed protein 27 9.4
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 303 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 443
V+V WN+ + T RP+LL + +C V+ W G G+Y A+
Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = -1
Query: 628 WPSRIQTSNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAPPLLMSQTKKLPRNCPTLGT 449
+P TS S +SS+TD+ R + + + PI PP + + P+
Sbjct: 457 FPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLSSTPPITPPDAFQSPQV---STPSSAV 513
Query: 448 PLTAVLYRPLARPRQSTTITLQSET 374
P+T + P QS++I T
Sbjct: 514 PITEPVSEPKKPEAQSSSILSTQST 538
>At5g45500.1 68418.m05589 expressed protein weak similarity to
resistance complex protein I2C-2 [Lycopersicon
esculentum] GI:2258317
Length = 489
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 176 QGTVQTTNTGFSPDVTKTTIKLLQMASQLYPELELQWKPASLCYCPRLEQQRKLRC 343
+G ++ T G S + K+ + + P+L+++W+ S Y P L+ K +C
Sbjct: 412 KGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQC 467
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 639 TTPPGPAGSKPVTLLGLPPACRPALPTTCAPKLKPI 532
TTPP A P + + PPA P P APK+ P+
Sbjct: 57 TTPPVSAAQPPASPVTPPPAVTPTSPP--APKVAPV 90
>At5g13950.1 68418.m01631 expressed protein
Length = 939
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +1
Query: 109 PDGEGVPH--LVDLEETAEEDI----LMSRNGANNQYWLFTRRNQNN-HQVITNGKSTLS 267
P+G+ V +DLE E++ ++ RN ANN + F NQN Q + NG+ +S
Sbjct: 624 PEGDEVAKNCFIDLESNMPEEVDRRKMLQRN-ANNSFGSFPNNNQNEILQSLFNGQGMVS 682
Query: 268 GT 273
T
Sbjct: 683 RT 684
>At3g30490.1 68416.m03858 hypothetical protein
Length = 144
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 323 VPAVDNNKERQVSIVVRVPDRVDLP 249
VP +D R V +V+ PDR DLP
Sbjct: 2 VPHIDGQFLRDVEVVLTAPDRADLP 26
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 401 HNNNVAVGDGQQGGADHGVHSGV-SVAVPAVDNNKERQVSIVVRVPDRVDLP 249
+NNN V G GG+ G G+ S VP ++++ VS+ + + ++ LP
Sbjct: 475 NNNNSYVNSGSGGGSAVGFSYGIGSSNVPVMNSSTNGGVSLTLGLHHQIGLP 526
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 336 SAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV-----WLIN 500
SA+N+++ A +AV+ V+ W+ LA ++ VP V +F+G F + WL
Sbjct: 181 SAINSLVMCASVAVTYLLGSVISWQKLA------LISTVPCVFEFVGLFFIPESPRWLSR 234
Query: 501 NG 506
NG
Sbjct: 235 NG 236
>At2g40630.1 68415.m05011 expressed protein
Length = 535
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 58 PGDNSHYVEGVSRYVWMPDGEGVPHLVDLEETAEEDILMSRNGANNQYWLFTR--RNQNN 231
P +S + VS+ + PD EG+ +V + +DI S Y + +N
Sbjct: 68 PNLSSEKLSKVSKVLVAPDAEGIRRVVRENDVLSKDIKPSSTVETRTYLPKAKSISTDDN 127
Query: 232 HQVITNGKSTLSGTRT 279
+V+ +GK L T
Sbjct: 128 RRVVNSGKQALLENHT 143
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -2
Query: 687 GLP-PHKLCVTVQGLVVTTPPGPAGSKPVTLLGLPPACRPALP-TTCAPKLKPIKWTRPQ 514
GLP P+ L +Q TPP P GS + LP A P +T + L P P
Sbjct: 198 GLPMPNSLQQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPSSLPFPG 257
Query: 513 LP 508
LP
Sbjct: 258 LP 259
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 634 PTWPSRIQTSNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAPPLLMS 491
PTW + + +++ + S T SSS +R Q + ST I P +LMS
Sbjct: 138 PTWRNELASTSNLQS-TPGSSSERPRIRHQHSQSMDGSTTIKPEMLMS 184
>At5g62660.1 68418.m07864 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 379
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -1
Query: 718 VKIPRRPPSVWIAST*ALRYGSGLGCYHPTWPSRIQTSNPVGSATSLSSSVT 563
VK PRRPP ++++ L S + C++P + +S+ SA SL ++T
Sbjct: 84 VKTPRRPPRLYMSLVDHLLCNSLMVCHYPCESVLLSSSS---SAESLEQNLT 132
>At1g59940.1 68414.m06752 two-component responsive regulator /
response regulator 3 (ARR3) identical to response
regulator 3 GI:3953595 from [Arabidopsis thaliana]
Length = 231
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -1
Query: 580 LSSSVTDNVRAQAEANQVDSTPIAPPLLMSQTKKLPRNCPTLGTPLTAV 434
L S +T +V+ AE N+ T PP +S T + + T+ +PL+ V
Sbjct: 156 LRSYLTRDVKVAAEGNKRKLTTPPPPPPLSATSSMESSDSTVESPLSMV 204
>At5g47240.1 68418.m05825 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 369
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 708 REDHRRCGLPPHKLCVTVQG 649
R HR CGL PH+L T G
Sbjct: 323 RLSHRYCGLSPHRLVSTFDG 342
>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 170
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -1
Query: 643 CYHPTWPSRIQTSNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAPPLLMSQTKKL--PR 470
CY + Q S+ + S S SV+ + +E S+PI PPLL + + KL P
Sbjct: 35 CYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEI----SSPIIPPLLKNPSVKLEVPE 90
Query: 469 NCPTLGTPLTAVLYRPLARPRQSTT 395
+ P T RP + TT
Sbjct: 91 KKAVISLPTTE--QNQQQRPNRCTT 113
>At2g24910.1 68415.m02978 hypothetical protein
Length = 155
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 323 VPAVDNNKERQVSIVVRVPDRVDLP 249
VP +D R V V+ PDR DLP
Sbjct: 2 VPHIDGQFLRDVEAVLTAPDRADLP 26
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +3
Query: 222 PKQPSSYYK--WQVNSIRNSNYNG 287
PK P+S YK W+ I+N NY G
Sbjct: 220 PKIPNSAYKGPWKAKRIKNPNYKG 243
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +3
Query: 222 PKQPSSYYK--WQVNSIRNSNYNG 287
PK P+S YK W+ I+N NY G
Sbjct: 274 PKIPNSAYKGPWKAKRIKNPNYKG 297
>At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative
(CHX24) similar to Na+/H+-exchanging protein NapA -
Enterococcus hirae, PIR:A42111; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 859
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Frame = +1
Query: 451 FPVSDSSLAT----FWSGSSTTEGQLGS 522
FP++D SL FW G+STT G++ +
Sbjct: 5 FPINDQSLLPAHFGFWPGNSTTPGEVSN 32
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 15 WLNSIVFWQCYPHDPWRQQ 71
WL+S ++ CYP P+R++
Sbjct: 762 WLSSFLYLSCYPSAPYRRK 780
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -1
Query: 499 LMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLF 320
+ S +KL CP +T +L R L PR + E + T+EFP L+
Sbjct: 397 MTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEFPHLY 455
Query: 319 QPWTI 305
+ I
Sbjct: 456 NKYDI 460
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 633 PPGPAGSKPVTLLGLPPACRPALPTTCAPK 544
PP P P +L PP+ R LP + +PK
Sbjct: 131 PPSPRAEVPRSLSPKPPSPRADLPRSLSPK 160
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 633 PPGPAGSKPVTLLGLPPACRPALPTTCAPK 544
PP P P +L PP+ R LP + +PK
Sbjct: 130 PPSPRAEVPRSLSPKPPSPRADLPRSLSPK 159
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 633 PPGPAGSKPVTLLGLPPACRPALPTTCAPKLKP 535
PP P KP+ PP P LPTT A P
Sbjct: 494 PPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPP 526
>At1g32810.1 68414.m04044 expressed protein
Length = 654
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 610 TSNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAPPL-LMSQTKKLP 473
T NPV S SL+ +++D A +Q++S+P P + M Q LP
Sbjct: 287 TKNPVQSIISLAPNLSDEELALRLHHQLNSSPRVPRVPRMRQPGSLP 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,881
Number of Sequences: 28952
Number of extensions: 434235
Number of successful extensions: 1634
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -