Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0339
         (535 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   5.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   5.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   5.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   5.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   5.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   5.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   5.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   5.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.0  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 67  TPTVVFSVFLTALLMVTFTQRW 2
           TP   F  F+T++L      RW
Sbjct: 95  TPLFFFHSFMTSVLFSQVASRW 116


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 96  SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 147


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 236
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 325  PDCTGPDCNPNTSKNHFFFVFFNKE 251
            P C   DCN   + +   F  F KE
Sbjct: 1947 PKCWQVDCNKGPASDKSAFADFVKE 1971


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,477
Number of Sequences: 336
Number of extensions: 2922
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)